A profile of the GenePOC Carba C assay for the detection and differentiation of gene sequences associated with carbapenem-non-susceptibility

Expert Rev Mol Diagn. 2020 Aug;20(8):757-769. doi: 10.1080/14737159.2020.1785287. Epub 2020 Jul 7.

Abstract

The novel GenePOC/Revogene Carba C assay (GenePOC, Québec, Canada; now Meridian Bioscience, Cincinnati, OH, USA) is a CE-IVD marked, FDA-approved qualitative in vitro diagnostic test for the detection of genes associated with carbapenem-non-susceptibility. Colonies of Enterobacterales can be directly tested without prior DNA isolation. The test consists of a fluorescent-based real-time PCR assay that runs on the centripetal microfluidic revogene platform, providing results within 70 minutes. The assay was evaluated in two studies comprising a total of 294 molecularly characterized clinical Enterobacterales isolates. The overall sensitivity for the detection of carbapenemase gene sequences with the GenePOC assay was 100% (95% CI, 98.4% to 100). Besides the common KPC, VIM, NDM and OXA-48-like carbapenemase genes, also the very variable IMP variants were all detected. The specificity of the assay was 100% (95% CI, 98.8% to 100%). In this article the performance of the GenePOC/Revogene Carba C assay is evaluated and other currently available methods for the detection of carbapenemases are reviewed.

Keywords: Antimicrobial resistance; ESBL; GenePOC Carba/Revogene Carba C Assay; GeneXpert; MALDI-TOF; beta-lactamase; carbapenemase; in vitro diagnostic; multi-drug resistant bacteria; point-of-care; real-time PCR; whole genome sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / drug effects*
  • Bacteria / genetics*
  • Carbapenems / pharmacology*
  • Carbapenems / therapeutic use
  • Gene Expression Regulation, Bacterial / drug effects*
  • Humans
  • Microbial Sensitivity Tests / methods*
  • Molecular Diagnostic Techniques / methods
  • Reproducibility of Results
  • Sensitivity and Specificity
  • beta-Lactam Resistance*
  • beta-Lactamase Inhibitors / pharmacology*
  • beta-Lactamase Inhibitors / therapeutic use

Substances

  • Carbapenems
  • beta-Lactamase Inhibitors