Insight in the transcriptome data of hairy root disease-causing bacterium- Agrobacterium rhizogenes

Akhilesh Yadav; Hariom Verma; Waquar Akhter Ansari; Asha Lata Singh; Major Singh

doi:10.1016/j.dib.2020.105910

Insight in the transcriptome data of hairy root disease-causing bacterium- Agrobacterium rhizogenes

Data Brief. 2020 Jun 21:31:105910. doi: 10.1016/j.dib.2020.105910. eCollection 2020 Aug.

Authors

Akhilesh Yadav¹, Hariom Verma¹, Waquar Akhter Ansari¹, Asha Lata Singh¹, Major Singh²

Affiliations

¹ Department of Botany, Banaras Hindu University, Varanasi-221005, India.
² Crop Improvement Division, Indian Institute of Vegetable Research, Varanasi-221305, India.

Abstract

Agrobacterium rhizogenes induce the production of the hairy root through the transformation of plant genomes. In this article, we executed the transcriptome of A. rhizogenes through RNA-sequencing. RNA-sequencing of A. rhizogenes generated a total of 2.6 Gb raw data with a 75 bp paired-end sequence. The raw data has been submitted to the SRA database of NCBI with accession number SRR5641651. Reads were generated 2946 unigenes and all unigenes were annotated in the database. The length of transcripts ranged from 90 to 6369 bp, with a median transcript length of 968. The transcripts were annotated through the number of databases to obtain information about SSRs, SNPs, Gene Ontology, Transcription factors, and pathways analysis .

Keywords: Agrobacterium rhizogenes; Annotation; Illumina nextseq; RNA-seq; Transcriptome.