Circular RNA expression profile and m6A modification analysis in poorly differentiated adenocarcinoma of the stomach

Epigenomics. 2020 Jun;12(12):1027-1040. doi: 10.2217/epi-2019-0153. Epub 2020 Jul 13.

Abstract

Aims: To profile and characterize the circular RNA (circRNA) expression pattern in poorly differentiated gastric adenocarcinoma (PDGA). Methods & materials: CircRNA expression profiles in PDGA and adjacent nontumor tissues were analyzed by microarray. Five randomly selected differentiated expressed circRNAs (DECs) were validated by real-time quantitative PCR. m6A qualification of the top 20 DECs was conducted by m6A-immunoprecipitation and real-time quantitative PCR. Results: A total of 65 DECs were found in PDGA compared with the control. Hsa_circRNA_0077837 had the largest area under the curve. Most DECs had m6A modifications, the trend of m6A modification alteration was mainly consistent with the circRNA expression level. Conclusion: Our study revealed a set of DECs and their m6A modification alterations, which may provide new insight for their potential function in PDGA.

Keywords: circular RNA; gastric cancer; m6A modification; poorly differentiated adenocarcinoma.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma / genetics*
  • Adenosine
  • Aged
  • Cell Line, Tumor
  • DNA Methylation*
  • Female
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Male
  • Middle Aged
  • RNA, Circular / genetics*
  • Real-Time Polymerase Chain Reaction
  • Stomach Neoplasms / genetics*

Substances

  • RNA, Circular
  • Adenosine