In situ characterisation and manipulation of biological systems with Chi.Bio

PLoS Biol. 2020 Jul 30;18(7):e3000794. doi: 10.1371/journal.pbio.3000794. eCollection 2020 Jul.

Abstract

The precision and repeatability of in vivo biological studies is predicated upon methods for isolating a targeted subsystem from external sources of noise and variability. However, in many experimental frameworks, this is made challenging by nonstatic environments during host cell growth, as well as variability introduced by manual sampling and measurement protocols. To address these challenges, we developed Chi.Bio, a parallelised open-source platform that represents a new experimental paradigm in which all measurement and control actions can be applied to a bulk culture in situ. In addition to continuous-culturing capabilities, it incorporates tunable light outputs, spectrometry, and advanced automation features. We demonstrate its application to studies of cell growth and biofilm formation, automated in silico control of optogenetic systems, and readout of multiple orthogonal fluorescent proteins in situ. By integrating precise measurement and actuation hardware into a single low-cost platform, Chi.Bio facilitates novel experimental methods for synthetic, systems, and evolutionary biology and broadens access to cutting-edge research capabilities.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Automation
  • Biofilms
  • Bioreactors*
  • Cell Proliferation
  • Computer Simulation
  • Culture Techniques / instrumentation*
  • Optogenetics / instrumentation*
  • Software

Grants and funding

This study was entirely funded by Engineering and Physical Sciences Research Council (EPSRC) project EP/M002454/1 (https://epsrc.ukri.org/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.