Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro

Nat Commun. 2020 Aug 27;11(1):4304. doi: 10.1038/s41467-020-18001-x.

Abstract

Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-tRNA substrates is a bottleneck. Here, we rationally design non-canonical amino acid analogs with extended carbon chains (γ-, δ-, ε-, and ζ-) or cyclic structures (cyclobutane, cyclopentane, and cyclohexane) to improve tRNA charging. We then demonstrate site-specific incorporation of these non-canonical, backbone-extended monomers at the N- and C- terminus of peptides using wild-type and engineered ribosomes. This work expands the scope of ribosome-mediated polymerization, setting the stage for new medicines and materials.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acids, Cyclic / metabolism*
  • Genetic Engineering
  • Mutation
  • Peptide Biosynthesis*
  • Polymerization
  • RNA, Transfer / metabolism
  • Ribosomes / genetics
  • Ribosomes / metabolism*
  • Transfer RNA Aminoacylation*

Substances

  • Amino Acids, Cyclic
  • RNA, Transfer