Structural properties of target binding by profilaggrin A and B domains and other S100 fused-type calcium-binding proteins

J Dermatol Sci. 2020 Oct;100(1):39-49. doi: 10.1016/j.jdermsci.2020.08.009. Epub 2020 Aug 21.

Abstract

Background: Profilaggrin belongs to the S100 fused-type protein family expressed in keratinocytes and is important for skin barrier integrity. Its N-terminus contains an S100 ("A") domain and a unique "B" domain with a nuclear localization sequence.

Objective: To determine whether profilaggrin B domain cooperates with the S100 domain to bind macromolecules. To characterize the biochemical and structural properties of the profilaggrin N-terminal "AB" domain and compare it to other S100 fused-type proteins.

Methods: We used biochemical (protease protection, light scattering, fluorescence spectroscopy, pull-down assays) and computational techniques (sequence analysis, molecular modeling with crystallographic structures) to examine human profilaggrin and S100 fused-type proteins.

Results: Comparing profilaggrin S100 crystal structure with models of the other S100 fused-type proteins demonstrated each has a unique chemical composition of solvent accessible surface around the hydrophobic binding pocket. S100 fused-type proteins exhibit higher pocket hydrophobicity than soluble S100 proteins. The inter-EF-hand linker in S100 fused-type proteins contains conserved hydrophobic residues involved in binding substrates. Profilaggrin B domain cooperates with the S100 domain to bind annexin II and keratin intermediate filaments in a calcium-dependent manner using exposed cationic surface. Using molecular modeling we demonstrate profilaggrin B domain likely interacts with annexin II domains I and II. Steric clash analysis shows annexin II N-terminal peptide is favored to bind profilaggrin among S100 fused-type proteins.

Conclusion: The N-terminal S100 and B domains of profilaggrin cooperate to bind substrate molecules in granular layer keratinocytes to provide epidermal barrier functions.

Keywords: Calcium binding protein; Epidermis; Filaggrin; Protein structure; S100 protein; Skin disease.

MeSH terms

  • Amino Acid Sequence
  • Annexin A2 / genetics
  • Annexin A2 / isolation & purification
  • Annexin A2 / metabolism
  • Annexin A2 / ultrastructure
  • Binding Sites / genetics
  • Crystallography, X-Ray
  • Filaggrin Proteins
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Intermediate Filament Proteins / genetics
  • Intermediate Filament Proteins / isolation & purification
  • Intermediate Filament Proteins / metabolism
  • Intermediate Filament Proteins / ultrastructure*
  • Intermediate Filaments / metabolism
  • Keratinocytes
  • Keratins / genetics
  • Keratins / isolation & purification
  • Keratins / metabolism
  • Keratins / ultrastructure
  • Molecular Docking Simulation
  • Mutation
  • Protein Binding / genetics
  • Protein Conformation, alpha-Helical / genetics
  • Protein Domains / genetics
  • Protein Precursors / genetics
  • Protein Precursors / isolation & purification
  • Protein Precursors / metabolism
  • Protein Precursors / ultrastructure*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Recombinant Proteins / ultrastructure
  • S100 Proteins / metabolism*

Substances

  • ANXA2 protein, human
  • Annexin A2
  • FLG protein, human
  • Filaggrin Proteins
  • Intermediate Filament Proteins
  • Protein Precursors
  • Recombinant Proteins
  • S100 Proteins
  • Keratins