Founder effect of the TTTCA repeat insertions in SAMD12 causing BAFME1

Eur J Hum Genet. 2021 Feb;29(2):343-348. doi: 10.1038/s41431-020-00729-1. Epub 2020 Sep 24.

Abstract

Benign adult familial myoclonic epilepsy type 1 (BAFME1) in several Japanese and Chinese families has recently been found to be caused by pentanucleotide repeat expansions in SAMD12. We identified a Thai family with six members affected with BAFME. Microsatellite studies suggested a linkage to the BAFME1 region on chromosome 8q24. Subsequently, long-read whole-genome sequencing showed the (TTTTA)446(TTTCA)149 in intron 4 of SAMD12 in an affected member. Repeat-primed PCR and long-range PCR revealed that the pentanucleotide repeat expansions segregated with the disease status. Our Thai family is the first non-Japanese and non-Chinese family with BAFME1. SNP array showed that the aberrant repeats had the same haplotype as those previously determined in Japanese and Chinese patients suggesting a common ancestry. The variant is estimated to arise ~12,000 years ago.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Asian People
  • Epilepsies, Myoclonic / genetics*
  • Female
  • Founder Effect*
  • Genetic Linkage
  • Haplotypes
  • Humans
  • Introns
  • Male
  • Microsatellite Repeats
  • Nerve Tissue Proteins / genetics*
  • Pedigree
  • Polymerase Chain Reaction
  • Thailand
  • Whole Genome Sequencing
  • Young Adult

Substances

  • Nerve Tissue Proteins
  • SAMD12 protein, human

Supplementary concepts

  • Epilepsy, Myoclonic, Benign Adult Familial, Type 1