Flight-Associated Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Corroborated by Whole-Genome Sequencing

Emerg Infect Dis. 2020 Dec;26(12):2872-2880. doi: 10.3201/eid2612.203910. Epub 2020 Sep 29.

Abstract

To investigate potential transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) during a domestic flight within Australia, we performed epidemiologic analyses with whole-genome sequencing. Eleven passengers with PCR-confirmed SARS-CoV-2 infection and symptom onset within 48 hours of the flight were considered infectious during travel; 9 had recently disembarked from a cruise ship with a retrospectively identified SARS-CoV-2 outbreak. The virus strain of those on the cruise and the flight was linked (A2-RP) and had not been previously identified in Australia. For 11 passengers, none of whom had traveled on the cruise ship, PCR-confirmed SARS-CoV-2 illness developed between 48 hours and 14 days after the flight. Eight cases were considered flight associated with the distinct SARS-CoV-2 A2-RP strain; the remaining 3 cases (1 with A2-RP) were possibly flight associated. All 11 passengers had been in the same cabin with symptomatic persons who had culture-positive A2-RP virus strain. This investigation provides evidence of flight-associated SARS-CoV-2 transmission.

Keywords: 2019 novel coronavirus disease; COVID-19; SARS-CoV-2; aircraft; airport; coronavirus disease; cruise; flight-associated; in-flight; outbreak; respiratory infections; severe acute respiratory syndrome coronavirus 2; transmission; viruses; whole-genome sequencing; zoonoses.

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Aged, 80 and over
  • Air Travel*
  • Australia
  • COVID-19 / transmission*
  • Child
  • Child, Preschool
  • Female
  • Humans
  • Male
  • Middle Aged
  • Pandemics
  • Retrospective Studies
  • Risk Assessment
  • SARS-CoV-2 / genetics*
  • Whole Genome Sequencing / methods*
  • Young Adult