Hymenobacter busanensis sp. nov., radiation-resistant species isolated from soil in South Korea

Arch Microbiol. 2021 Mar;203(2):755-762. doi: 10.1007/s00203-020-02080-x. Epub 2020 Oct 12.

Abstract

Two bacterial strains designated as MA3T and BT182 were isolated from a soil sample in South Korea. Cells of the two strains were Gram-stain-negative, non-motile, rod-shaped and formed red colonies on R2A agar at 25 °C. The 16S rRNA genes of the two strains shared a sequence similarity of 99.8%. Both strains shared the highest 16S rRNA gene similarity of 96.8% with Hymenobacter edaphi NLT, followed by Hymenobacter paludis KBP-30T (96.3%), Hymenobacter coalescens WW84T (96.3%) and Hymenobacter gummosus ANT-18T (96.3%). Growth was observed at 15-37 °C (optimum 30 °C), pH 6-8 (optimum pH 7) and in the presence up to 1% NaCl. The genome size of strains MA3T and BT182 is 4.9 Mb and 4.8 Mb, respectively. The genomic G + C content of both strains is 62.0 mol%. The main polar lipid of the strains was phosphatidylethanolamine, the only respiratory quinone detected was menaquinone-7 and the major fatty acids were anteiso-C15:0, iso-C15:0, summed feature 4 (iso-C17:1 I/anteiso-C17:1 B) and summed feature 3 (C16:1 ω6c/C16:1 ω7c), supporting the affiliation of these strains with the genus Hymenobacter. Based on the phylogenetic, genotypic, phenotypic and chemotaxonomic data, strains MA3T and BT182 represent a novel species of the genus Hymenobacter, for which the name Hymenobacter busanensis is proposed. The type strain is MA3T (= KCTC 72631T = NBRC 114193T).

Keywords: Hymenobacter; Hymenobacteraceae; Soil bacteria.

MeSH terms

  • Bacteroidetes / classification
  • Bacteroidetes / genetics
  • Base Composition
  • Cytophagaceae / classification*
  • Cytophagaceae / genetics
  • Cytophagaceae / radiation effects
  • Fatty Acids / analysis
  • Genome, Bacterial / genetics
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Soil Microbiology*
  • Species Specificity

Substances

  • Fatty Acids
  • RNA, Ribosomal, 16S

Supplementary concepts

  • Hymenobacter coalescens
  • Hymenobacter gummosus
  • Hymenobacter paludis