The complete chloroplast genome of Toxicodendron griffithii

doi:10.1080/23802359.2020.1768931

. 2020 May 28;5(3):2211-2212.

doi: 10.1080/23802359.2020.1768931. eCollection 2020.

The complete chloroplast genome of Toxicodendron griffithii

Yongjie Li¹, Yiyun Tang², Tao Wu^{1

3

4}

Affiliations

¹ Institute of Economic Forest, Yunnan Academy of Forestry and Grassland, Kunming, Yunnan, China.
² Woody Oil Industry Research Institute of Nujiang Prefectrue, Lushui, Yunnan, China.
³ Yunnan Laboratory for Conservation of Rare, Endangered and Endemic Forest Plants, Public Key Laboratory of the State Forestry Administration, Kunming, Yunnan, China.
⁴ Yunnan Provincial Key Laboratory of Cultivation and Exploitation of Forest Plants, Kunming, Yunnan, China.

PMID: 33366976
PMCID: PMC7510646
DOI: 10.1080/23802359.2020.1768931

The complete chloroplast genome of Toxicodendron griffithii

Yongjie Li et al. Mitochondrial DNA B Resour. 2020.

. 2020 May 28;5(3):2211-2212.

doi: 10.1080/23802359.2020.1768931. eCollection 2020.

Authors

Yongjie Li¹, Yiyun Tang², Tao Wu^{1

3

4}

Affiliations

¹ Institute of Economic Forest, Yunnan Academy of Forestry and Grassland, Kunming, Yunnan, China.
² Woody Oil Industry Research Institute of Nujiang Prefectrue, Lushui, Yunnan, China.
³ Yunnan Laboratory for Conservation of Rare, Endangered and Endemic Forest Plants, Public Key Laboratory of the State Forestry Administration, Kunming, Yunnan, China.
⁴ Yunnan Provincial Key Laboratory of Cultivation and Exploitation of Forest Plants, Kunming, Yunnan, China.

PMID: 33366976
PMCID: PMC7510646
DOI: 10.1080/23802359.2020.1768931

Abstract

The whole chloroplast (cp) genome sequence of Toxicodendron griffithii has been characterized from Illumina pair-end sequencing. The complete cp genome was 159,613 bp in length, containing a large single-copy region (LSC) of 87,722 bp and a small single-copy region (SSC) of 18,911 bp, which were separated by a pair of 26,490 bp inverted repeat regions (IRs). The genome contained 132 genes (113 unique), including 87 protein-coding genes (80 unique), 37 tRNA genes (29 unique), and 8 rRNA genes (4 unique). The overall GC content of T. griffithii cp genome is 37.94%. Phylogenetic analysis of 14 chloroplast genomes within the family Anacardiaceae suggests that T. griffithii is closely related to genus Rhus and genus Pistacia.

Keywords: Toxicodendron griffithii; chloroplast genome.

PubMed Disclaimer

Conflict of interest statement

No potential conflict of interest was reported by the author(s).

Figures

**Figure 1.**
Phylogenetic relationships of 14 species from the family Asparagaceae based on the complete chloroplast genome sequences. Bootstrap percentages are indicated for each branch.

See this image and copyright information in PMC

Cited by

Complete Chloroplast Genome Sequence of the Western Poison Oak, Toxicodendron diversilobum (Anacardiaceae), from California.
Huitron Vazquez LI, Aviles PE, Bailon SA, Cabanillas AG, Fernandez A, Galarza JI, Guerrero B, Hernandez AB, Hernandez D, Jarrett K, Li T, Maravillo FJ, Moreno M, Perez A, Rosales NA, Ruegg HF, Valdez J, Bravo KM, Chávez VL, Diaz DI, Enriquez D, Martinez EL, Mendoza Padilla J, Meza J, Nelson SV, Quintero-Ahumada C, Ramirez AM, Hughey JR. Huitron Vazquez LI, et al. Microbiol Resour Announc. 2023 Mar 16;12(3):e0127922. doi: 10.1128/mra.01279-22. Epub 2023 Feb 16. Microbiol Resour Announc. 2023. PMID: 36794956 Free PMC article.
Stepped Geomorphology Shaped the Phylogeographic Structure of a Widespread Tree Species (Toxicodendron vernicifluum, Anacardiaceae) in East Asia.
Wang L, Li Y, Noshiro S, Suzuki M, Arai T, Kobayashi K, Xie L, Zhang M, He N, Fang Y, Zhang F. Wang L, et al. Front Plant Sci. 2022 Jun 2;13:920054. doi: 10.3389/fpls.2022.920054. eCollection 2022. Front Plant Sci. 2022. PMID: 35720535 Free PMC article.

References

1. Katoh K, Standley DM.. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4):772–780. - PMC - PubMed
1. Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. . 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. - PMC - PubMed
1. Kim JH, Shin YC, Ko SG.. 2014. Integrating traditional medicine into modern inflammatory diseases care: multitargeting by Rhus verniciflua Stokes. Mediators Inflamm. 2014:154561. - PMC - PubMed
1. Lee KW, Um ES, Jung BB, Choi ES, Kim EY, Lee S, Jang E, Lee JH, Kim Y.. 2018. Rhus verniciflua Stokes extract induces inhibition of cell growth and apoptosis in human chronic myelogenous leukemia K562 cells. Oncol. Rep. 39(3):1141–1147. - PubMed
1. Min T, Anders B.. 2009. Anacardiaceae. Vol. 11. In: Wu ZY, Peter PH, editors. Flora of China. Science Press, Beijing & Missouri Botanical Garden Press, St. Louis; p. 335–357.

Grants and funding

This work was financially supported by the Yunnan Technology Innovation Talent Promotion Plan ][2018HB079].

LinkOut - more resources

Full Text Sources
Miscellaneous
- NCI CPTAC Assay Portal

[1] Katoh K, Standley DM.. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4):772–780. - PMC - PubMed

[2] Katoh K, Standley DM.. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4):772–780. - PMC - PubMed

[3] Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. . 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. - PMC - PubMed

[4] Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. . 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. - PMC - PubMed

[5] Kim JH, Shin YC, Ko SG.. 2014. Integrating traditional medicine into modern inflammatory diseases care: multitargeting by Rhus verniciflua Stokes. Mediators Inflamm. 2014:154561. - PMC - PubMed

[6] Kim JH, Shin YC, Ko SG.. 2014. Integrating traditional medicine into modern inflammatory diseases care: multitargeting by Rhus verniciflua Stokes. Mediators Inflamm. 2014:154561. - PMC - PubMed

[7] Lee KW, Um ES, Jung BB, Choi ES, Kim EY, Lee S, Jang E, Lee JH, Kim Y.. 2018. Rhus verniciflua Stokes extract induces inhibition of cell growth and apoptosis in human chronic myelogenous leukemia K562 cells. Oncol. Rep. 39(3):1141–1147. - PubMed

[8] Lee KW, Um ES, Jung BB, Choi ES, Kim EY, Lee S, Jang E, Lee JH, Kim Y.. 2018. Rhus verniciflua Stokes extract induces inhibition of cell growth and apoptosis in human chronic myelogenous leukemia K562 cells. Oncol. Rep. 39(3):1141–1147. - PubMed

[9] Min T, Anders B.. 2009. Anacardiaceae. Vol. 11. In: Wu ZY, Peter PH, editors. Flora of China. Science Press, Beijing & Missouri Botanical Garden Press, St. Louis; p. 335–357.

[10] Min T, Anders B.. 2009. Anacardiaceae. Vol. 11. In: Wu ZY, Peter PH, editors. Flora of China. Science Press, Beijing & Missouri Botanical Garden Press, St. Louis; p. 335–357.

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

The complete chloroplast genome of Toxicodendron griffithii

Affiliations

The complete chloroplast genome of Toxicodendron griffithii

Authors

Affiliations

Abstract

Conflict of interest statement

Figures

Similar articles

Cited by

References

Grants and funding

LinkOut - more resources

Full Text Sources

Miscellaneous

Abstract

Conflict of interest statement

Figures

Similar articles

Cited by

References

Related information

Grants and funding

LinkOut - more resources

Full Text Sources

Miscellaneous