Spatially resolved transcriptomics in neuroscience

doi:10.1038/s41592-020-01040-z

. 2021 Jan;18(1):23-25.

doi: 10.1038/s41592-020-01040-z.

Spatially resolved transcriptomics in neuroscience

Jennie L Close¹, Brian R Long¹, Hongkui Zeng²

Affiliations

¹ Allen Institute for Brain Science, Seattle, WA, USA.
² Allen Institute for Brain Science, Seattle, WA, USA. hongkuiz@alleninstitute.org.

PMID: 33408398
DOI: 10.1038/s41592-020-01040-z

Spatially resolved transcriptomics in neuroscience

Jennie L Close et al. Nat Methods. 2021 Jan.

. 2021 Jan;18(1):23-25.

doi: 10.1038/s41592-020-01040-z.

Authors

Jennie L Close¹, Brian R Long¹, Hongkui Zeng²

Affiliations

¹ Allen Institute for Brain Science, Seattle, WA, USA.
² Allen Institute for Brain Science, Seattle, WA, USA. hongkuiz@alleninstitute.org.

PMID: 33408398
DOI: 10.1038/s41592-020-01040-z

No abstract available

PubMed Disclaimer

Cited by

Introduction: What Are Dendritic Spines?
Rasia-Filho AA, Calcagnotto ME, von Bohlen Und Halbach O. Rasia-Filho AA, et al. Adv Neurobiol. 2023;34:1-68. doi: 10.1007/978-3-031-36159-3_1. Adv Neurobiol. 2023. PMID: 37962793
Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression.
Goetz J, Jessen ZF, Jacobi A, Mani A, Cooler S, Greer D, Kadri S, Segal J, Shekhar K, Sanes JR, Schwartz GW. Goetz J, et al. Cell Rep. 2022 Jul 12;40(2):111040. doi: 10.1016/j.celrep.2022.111040. Cell Rep. 2022. PMID: 35830791 Free PMC article.
Statistical and machine learning methods for spatially resolved transcriptomics with histology.
Hu J, Schroeder A, Coleman K, Chen C, Auerbach BJ, Li M. Hu J, et al. Comput Struct Biotechnol J. 2021 Jul 1;19:3829-3841. doi: 10.1016/j.csbj.2021.06.052. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34285782 Free PMC article. Review.
Molecularly defined and spatially resolved cell atlas of the whole mouse brain.
Zhang M, Pan X, Jung W, Halpern AR, Eichhorn SW, Lei Z, Cohen L, Smith KA, Tasic B, Yao Z, Zeng H, Zhuang X. Zhang M, et al. Nature. 2023 Dec;624(7991):343-354. doi: 10.1038/s41586-023-06808-9. Epub 2023 Dec 13. Nature. 2023. PMID: 38092912 Free PMC article.
Unraveling Spatial Gene Associations with SEAGAL: a Python Package for Spatial Transcriptomics Data Analysis and Visualization.
Wang L, Liu C, Liu Z. Wang L, et al. bioRxiv [Preprint]. 2023 Feb 13:2023.02.13.528331. doi: 10.1101/2023.02.13.528331. bioRxiv. 2023. Update in: Bioinformatics. 2023 Jul 1;39(7):btad431. doi: 10.1093/bioinformatics/btad431 PMID: 36824948 Free PMC article. Updated. Preprint.

See all "Cited by" articles

References

1. Zeng, H. & Sanes, J. R. Nat. Rev. Neurosci. 18, 530–546 (2017). - DOI
1. Hodge, R. D. et al. Nature 573, 61–68 (2019). - DOI
1. Lake, B. B. et al. Science 352, 1586–1590 (2016). - DOI
1. Tasic, B. et al. Nature 563, 72–78 (2018). - DOI
1. Zeisel, A. et al. Science 347, 1138–1142 (2015). - DOI

Publication types

Actions
Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

Grants and funding

U19 MH114830/MH/NIMH NIH HHS/United States

LinkOut - more resources

Full Text Sources
- Nature Publishing Group
Other Literature Sources
- scite Smart Citations

[1] Zeng, H. & Sanes, J. R. Nat. Rev. Neurosci. 18, 530–546 (2017). - DOI

[2] Zeng, H. & Sanes, J. R. Nat. Rev. Neurosci. 18, 530–546 (2017). - DOI

[3] Hodge, R. D. et al. Nature 573, 61–68 (2019). - DOI

[4] Hodge, R. D. et al. Nature 573, 61–68 (2019). - DOI

[5] Lake, B. B. et al. Science 352, 1586–1590 (2016). - DOI

[6] Lake, B. B. et al. Science 352, 1586–1590 (2016). - DOI

[7] Tasic, B. et al. Nature 563, 72–78 (2018). - DOI

[8] Tasic, B. et al. Nature 563, 72–78 (2018). - DOI

[9] Zeisel, A. et al. Science 347, 1138–1142 (2015). - DOI

[10] Zeisel, A. et al. Science 347, 1138–1142 (2015). - DOI

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

Spatially resolved transcriptomics in neuroscience

Affiliations

Spatially resolved transcriptomics in neuroscience

Authors

Affiliations

Similar articles

Cited by

References

Publication types

MeSH terms

Grants and funding

LinkOut - more resources

Full Text Sources

Other Literature Sources