Approaches for the integration of big data in translational medicine: single-cell and computational methods

Ann N Y Acad Sci. 2021 Jun;1493(1):3-28. doi: 10.1111/nyas.14544. Epub 2021 Jan 6.

Abstract

Translational medicine describes a bench-to-bedside approach that eventually converts findings from basic scientific studies into real-world clinical research. It encompasses new treatments, advanced equipment, medical procedures, preventive and diagnostic approaches creating a bridge between basic studies and clinical research. Despite considerable investment in basic science, improvements in technology, and increased knowledge of the biology of human disease, translation of laboratory findings into substantial therapeutic progress has been slower than expected, and the return on investment has been limited in terms of clinical efficacy. In this review, we provide a fresh perspective on some experimental and computational approaches for translational medicine. We cover the analysis, visualization, and modeling of high-dimensional data, with a focus on single-cell technologies, sequence, and structure analysis. Current challenges, limitations, and future directions, with examples from cancer and fibrotic disease, will be discussed.

Keywords: cancer; computational approach; science; therapeutic progress; translational medicine.

Publication types

  • Review

MeSH terms

  • Big Data*
  • Computational Biology / methods
  • Computational Biology / statistics & numerical data
  • Computer Simulation
  • Data Mining
  • Epigenome
  • Female
  • Fibrosis / diagnosis
  • Fibrosis / therapy
  • Gene Expression Profiling / methods
  • Gene Expression Profiling / statistics & numerical data
  • Genome-Wide Association Study / methods
  • Genome-Wide Association Study / statistics & numerical data
  • Humans
  • Machine Learning
  • Male
  • Neoplasms / diagnosis
  • Neoplasms / etiology
  • Neoplasms / therapy
  • Prostatic Neoplasms / diagnosis
  • Prostatic Neoplasms / etiology
  • Prostatic Neoplasms / therapy
  • Proteome
  • Single-Cell Analysis / methods
  • Single-Cell Analysis / statistics & numerical data
  • Translational Research, Biomedical / methods*
  • Translational Research, Biomedical / statistics & numerical data
  • Whole Genome Sequencing / methods
  • Whole Genome Sequencing / statistics & numerical data

Substances

  • Proteome