Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex

Genes Dev. 2021 Mar 1;35(5-6):392-409. doi: 10.1101/gad.347989.120. Epub 2021 Feb 11.

Abstract

Nuclear Argonaute proteins, guided by their bound small RNAs to nascent target transcripts, mediate cotranscriptional silencing of transposons and repetitive genomic loci through heterochromatin formation. The molecular mechanisms involved in this process are incompletely understood. Here, we show that the SFiNX complex, a silencing mediator downstream from nuclear Piwi-piRNA complexes in Drosophila, facilitates cotranscriptional silencing as a homodimer. The dynein light chain protein Cut up/LC8 mediates SFiNX dimerization, and its function can be bypassed by a heterologous dimerization domain, arguing for a constitutive SFiNX dimer. Dimeric, but not monomeric SFiNX, is capable of forming molecular condensates in a nucleic acid-stimulated manner. Mutations that prevent SFiNX dimerization result in loss of condensate formation in vitro and the inability of Piwi to initiate heterochromatin formation and silence transposons in vivo. We propose that multivalent SFiNX-nucleic acid interactions are critical for heterochromatin establishment at piRNA target loci in a cotranscriptional manner.

Keywords: Drosophila oogenesis; LC8; Panoramix; Piwi; cotranscriptional silencing; heterochromatin formation; molecular condensates; piRNA pathway; transposon silencing.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Argonaute Proteins / metabolism*
  • Dimerization
  • Drosophila Proteins / chemistry
  • Drosophila Proteins / genetics*
  • Drosophila Proteins / metabolism*
  • Drosophila melanogaster / genetics*
  • Drosophila melanogaster / metabolism
  • Dyneins / metabolism
  • Gene Expression Regulation, Developmental / genetics*
  • Gene Silencing / physiology*
  • Multiprotein Complexes / chemistry
  • Multiprotein Complexes / genetics
  • Multiprotein Complexes / metabolism*
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Nucleocytoplasmic Transport Proteins / chemistry
  • Nucleocytoplasmic Transport Proteins / genetics
  • Nucleocytoplasmic Transport Proteins / metabolism
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • RNA-Binding Proteins / chemistry
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism

Substances

  • Argonaute Proteins
  • Drosophila Proteins
  • Multiprotein Complexes
  • Nuclear Proteins
  • Nucleocytoplasmic Transport Proteins
  • Nxt1 protein, Drosophila
  • Protein Subunits
  • RNA-Binding Proteins
  • ctp protein, Drosophila
  • nxf2 protein, Drosophila
  • panx protein, Drosophila
  • piwi protein, Drosophila
  • Dyneins