MITOL-dependent ubiquitylation negatively regulates the entry of PolγA into mitochondria

PLoS Biol. 2021 Mar 3;19(3):e3001139. doi: 10.1371/journal.pbio.3001139. eCollection 2021 Mar.

Abstract

Mutations in mitochondrial replicative polymerase PolγA lead to progressive external ophthalmoplegia (PEO). While PolγA is the known central player in mitochondrial DNA (mtDNA) replication, it is unknown whether a regulatory process exists on the mitochondrial outer membrane which controlled its entry into the mitochondria. We now demonstrate that PolγA is ubiquitylated by mitochondrial E3 ligase, MITOL (or MARCH5, RNF153). Ubiquitylation in wild-type (WT) PolγA occurs at Lysine 1060 residue via K6 linkage. Ubiquitylation of PolγA negatively regulates its binding to Tom20 and thereby its mitochondrial entry. While screening different PEO patients for mitochondrial entry, we found that a subset of the PolγA mutants is hyperubiquitylated by MITOL and interact less with Tom20. These PolγA variants cannot enter into mitochondria, instead becomes enriched in the insoluble fraction and undergo enhanced degradation. Hence, mtDNA replication, as observed via BrdU incorporation into the mtDNA, was compromised in these PEO mutants. However, by manipulating their ubiquitylation status by 2 independent techniques, these PEO mutants were reactivated, which allowed the incorporation of BrdU into mtDNA. Thus, regulated entry of non-ubiquitylated PolγA may have beneficial consequences for certain PEO patients.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Polymerase gamma / metabolism*
  • DNA Polymerase gamma / physiology
  • DNA Replication
  • DNA, Mitochondrial / genetics
  • HEK293 Cells
  • Humans
  • Membrane Proteins / metabolism*
  • Membrane Proteins / physiology
  • Mitochondria / metabolism
  • Mitochondrial Proteins / metabolism
  • Mutation
  • Ubiquitin-Protein Ligases / metabolism*
  • Ubiquitin-Protein Ligases / physiology
  • Ubiquitination

Substances

  • DNA, Mitochondrial
  • Membrane Proteins
  • Mitochondrial Proteins
  • MARCHF5 protein, human
  • Ubiquitin-Protein Ligases
  • DNA Polymerase gamma

Grants and funding

Sagar Sengupta acknowledges National Institute of Immunology (NII) intramural funding and the following extramural funding sources: Department of Biotechnology (DBT), India (BT/MED/30/SP11263/2015, BT/PR23545/BRB/10/1593/2017, BT/PR27681/GET/119/269/2018), Council of Scientific and Industrial Research (CSIR), India (37(1699)/17/EMR-11), Science & Engineering Research Board (SERB), India (EMR/2017/000541) and J C Bose Fellowship (JCB/2018/000013). EK acknowledges DST Inspire Faculty Fellowship (DST/INSPIRE/04/2017/000088) for salary and funding. Shabnam Saifi acknowledges DBT-RA Fellowship (Batch 35/July 2019/10) for salary and funding. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.