Discovery of a first-in-class CDK2 selective degrader for AML differentiation therapy

Nat Chem Biol. 2021 May;17(5):567-575. doi: 10.1038/s41589-021-00742-5. Epub 2021 Mar 4.

Abstract

The discovery of effective therapeutic treatments for cancer via cell differentiation instead of antiproliferation remains a great challenge. Cyclin-dependent kinase 2 (CDK2) inactivation, which overcomes the differentiation arrest of acute myeloid leukemia (AML) cells, may be a promising method for AML treatment. However, there is no available selective CDK2 inhibitor. More importantly, the inhibition of only the enzymatic function of CDK2 would be insufficient to promote notable AML differentiation. To further validate the role and druggability of CDK2 involved in AML differentiation, a suitable chemical tool is needed. Therefore, we developed first-in-class CDK2-targeted proteolysis-targeting chimeras (PROTACs), which promoted rapid and potent CDK2 degradation in different cell lines without comparable degradation of other targets, and induced remarkable differentiation of AML cell lines and primary patient cells. These data clearly demonstrated the practicality and importance of PROTACs as alternative tools for verifying CDK2 protein functions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antineoplastic Agents / chemical synthesis
  • Antineoplastic Agents / pharmacology*
  • Aurora Kinase A / genetics
  • Aurora Kinase A / metabolism
  • Cell Differentiation / drug effects*
  • Cell Line, Tumor
  • Cell Proliferation
  • Cyclin-Dependent Kinase 2 / antagonists & inhibitors
  • Cyclin-Dependent Kinase 2 / genetics
  • Cyclin-Dependent Kinase 2 / metabolism
  • Drug Design
  • Drug Discovery
  • Gene Expression Regulation, Leukemic / drug effects*
  • Humans
  • Ikaros Transcription Factor / genetics
  • Ikaros Transcription Factor / metabolism
  • Inhibitory Concentration 50
  • Leukemia, Myeloid, Acute / drug therapy
  • Leukemia, Myeloid, Acute / enzymology
  • Leukemia, Myeloid, Acute / genetics
  • Leukemia, Myeloid, Acute / pathology
  • Myeloid Progenitor Cells / drug effects*
  • Myeloid Progenitor Cells / enzymology
  • Myeloid Progenitor Cells / pathology
  • Piperazines / pharmacology
  • Primary Cell Culture
  • Proteolysis / drug effects*
  • Pyridines / pharmacology
  • Pyrimidines / pharmacology
  • Quinazolines / pharmacology
  • Signal Transduction
  • Structure-Activity Relationship
  • Transcriptome
  • Triazoles / chemical synthesis
  • Triazoles / pharmacology*

Substances

  • Antineoplastic Agents
  • IKZF1 protein, human
  • Piperazines
  • Pyridines
  • Pyrimidines
  • Quinazolines
  • Triazoles
  • Ikaros Transcription Factor
  • AURKA protein, human
  • Aurora Kinase A
  • CDK2 protein, human
  • Cyclin-Dependent Kinase 2
  • palbociclib
  • copanlisib