CRISPR/Cas9 System to Knockdown MicroRNA In Vitro and In Vivo

Methods Mol Biol. 2021:2300:133-139. doi: 10.1007/978-1-0716-1386-3_13.

Abstract

MicroRNAs (miRNAs) are a class of small noncoding single-stranded RNA molecules containing 18-22 nucleotides that play an important role in the regulation of gene expression at the post-transcriptional and translational levels. Loss-of-function studies are the fundamental strategy to examine miRNA function and target genes in cellular and molecular biology. Traditional methods for miRNA loss-of-function studies include miRNA-specific antisense inhibitors, miRNA sponges, and genetic knockout. However, efficiency, specificity, and stability of these methods are not adequate. Our study suggests that CRISPR/Cas9 is an economic, convenient, and innovative strategy with high efficiency, specificity, and stability for the modulation of miRNA expression. Herein, we describe a detailed protocol for knocking out miRNA genes in vitro and in vivo with the CRISPR/Cas9 system.

Keywords: CRISPR/Cas9; Knockout; MicroRNA.

MeSH terms

  • Animals
  • CRISPR-Cas Systems*
  • DEAD-box RNA Helicases / genetics
  • Gene Editing
  • Gene Expression Regulation
  • Gene Knockdown Techniques / methods*
  • Mice
  • MicroRNAs / genetics*
  • Plasmids / genetics
  • RNA, Messenger / genetics*
  • Ribonuclease III / genetics
  • Transfection

Substances

  • MicroRNAs
  • RNA, Messenger
  • Dicer1 protein, mouse
  • Drosha protein, mouse
  • Ribonuclease III
  • DEAD-box RNA Helicases