Improving axial resolution in Structured Illumination Microscopy using deep learning

Philos Trans A Math Phys Eng Sci. 2021 Jun 14;379(2199):20200298. doi: 10.1098/rsta.2020.0298. Epub 2021 Apr 26.

Abstract

Structured Illumination Microscopy (SIM) is a widespread methodology to image live and fixed biological structures smaller than the diffraction limits of conventional optical microscopy. Using recent advances in image up-scaling through deep learning models, we demonstrate a method to reconstruct 3D SIM image stacks with twice the axial resolution attainable through conventional SIM reconstructions. We further demonstrate our method is robust to noise and evaluate it against two-point cases and axial gratings. Finally, we discuss potential adaptions of the method to further improve resolution. This article is part of the Theo Murphy meeting issue 'Super-resolution structured illumination microscopy (part 1)'.

Keywords: Structured Illumination Microscopy; deep learning; microscopy; residual channel attention network; structure illumination.

Publication types

  • Evaluation Study

MeSH terms

  • Animals
  • Chromatin / ultrastructure
  • Computer Simulation
  • Deep Learning*
  • Humans
  • Image Processing, Computer-Assisted / methods
  • Image Processing, Computer-Assisted / statistics & numerical data
  • Imaging, Three-Dimensional / methods
  • Imaging, Three-Dimensional / statistics & numerical data
  • Microscopy, Confocal / methods
  • Microscopy, Confocal / statistics & numerical data
  • Microscopy, Fluorescence / methods*
  • Microscopy, Fluorescence / statistics & numerical data
  • Optical Phenomena

Substances

  • Chromatin