Complex structure reveals CcmM and CcmN form a heterotrimeric adaptor in β-carboxysome

Protein Sci. 2021 Aug;30(8):1566-1576. doi: 10.1002/pro.4090. Epub 2021 May 8.

Abstract

Carboxysome is an icosahedral self-assembled microcompartment that sequesters RuBisCO and carbonic anhydrases within a selectively permeable protein shell. The scaffolding proteins, CcmM, and CcmN were proposed to act as adaptors that crosslink the enzymatic core to shell facets. However, the details of interaction pattern remain unknown. Here we obtained a stable heterotrimeric complex of CcmM γ-carbonic anhydrase domain (termed CcmMNT ) and CcmN, with a 1:2 stoichiometry, which interacts with the shell proteins CcmO and CcmL in vitro. The 2.9 Å crystal structure of this heterotrimer revealed an asymmetric bundle composed of one CcmMNT and two CcmN subunits, all of which adopt a triangular left-handed β-helical barrel structure. The central CcmN subunit packs against CcmMNT and another CcmN subunit via a wall-to-edge or wall-to-wall pattern, respectively. Together with previous findings, we propose CcmMNT -CcmN functions as an adaptor to facilitate the recruitment of shell proteins and the assembly of intact β-carboxysome.

Keywords: CO2-concentrating mechanism; adaptor; carboxysome assembly; crystal structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins* / chemistry
  • Bacterial Proteins* / metabolism
  • Carbon Dioxide / metabolism
  • Carbonic Anhydrases / chemistry
  • Carbonic Anhydrases / metabolism
  • Crystallization
  • Models, Molecular
  • Multiprotein Complexes* / chemistry
  • Multiprotein Complexes* / metabolism
  • Organelles* / chemistry
  • Organelles* / metabolism
  • Protein Conformation
  • Ribulose-Bisphosphate Carboxylase / chemistry
  • Ribulose-Bisphosphate Carboxylase / metabolism
  • Synechococcus / chemistry
  • Synechococcus / metabolism

Substances

  • Bacterial Proteins
  • Multiprotein Complexes
  • Carbon Dioxide
  • Ribulose-Bisphosphate Carboxylase
  • Carbonic Anhydrases

Supplementary concepts

  • Synechococcus elongatus