Integrated Whole-Exome and Transcriptome Sequencing of Sporadic Parathyroid Adenoma

Front Endocrinol (Lausanne). 2021 May 14:12:631680. doi: 10.3389/fendo.2021.631680. eCollection 2021.

Abstract

Purpose: Hyperparathyroidism is the third most common endocrine disease. Parathyroid adenoma (PA) accounts for approximately 85% of cases of primary hyperparathyroidism, but the molecular mechanism is not fully understood. Herein, we aimed to investigate the genetic and transcriptomic profiles of sporadic PA.

Methods: Whole-exome sequencing (WES) and transcriptome sequencing (RNA-seq) of 41 patients with PA and RNA-seq of 5 normal parathyroid tissues were performed. Gene mutations and characterized expression changes were identified. To elucidate the molecular mechanism underlying PA, unsupervised consensus clustering of RNA-seq data was performed. The correlations between the sequencing data and clinicopathological features of these patients were analyzed.

Results: Previously reported PA driver gene mutations, such as MEN1 (9/41), mTOR (4/41), ZFX (3/41), CASR (3/41), EZH2 (2/41) and FAT1 (2/41), were also identified in our cohort. Furthermore, somatic mutation of EZH1, which had not been reported in PA, was found in 4 samples. RNA-seq showed that the expression levels of 84 genes were upregulated and 646 were downregulated in PA samples compared with normal samples. Unsupervised clustering analysis of RNA-seq data clustered these patients into 10 subgroups related to mutation or abnormal expression of a group of potential pathogenic genes.

Conclusion: MEN1, EZH2, CASR, EZH1, ZFX, mTOR and FAT1 mutations in PA were revealed. According to the RNA-seq data clustering analysis, cyclin D1, β-catenin, VDR, CASR and GCM2 may be important factors contributing to the PA gene expression profile.

Keywords: gene expression profiling; high-throughput; hyperparathyroidism; nucleotide sequencing; parathyroid diseases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenoma / genetics*
  • Adenoma / metabolism*
  • Adult
  • Aged
  • Cadherins / genetics
  • Cadherins / metabolism
  • Cluster Analysis
  • Enhancer of Zeste Homolog 2 Protein / genetics
  • Enhancer of Zeste Homolog 2 Protein / metabolism
  • Exome*
  • Female
  • Gene Expression Regulation
  • Genomics
  • Humans
  • Hyperparathyroidism / genetics
  • Hyperparathyroidism / metabolism
  • Kruppel-Like Transcription Factors / genetics
  • Kruppel-Like Transcription Factors / metabolism
  • Male
  • Middle Aged
  • Mutation
  • Parathyroid Neoplasms / genetics*
  • Parathyroid Neoplasms / metabolism*
  • Polycomb Repressive Complex 2 / genetics
  • Polycomb Repressive Complex 2 / metabolism
  • Proto-Oncogene Proteins / genetics
  • Proto-Oncogene Proteins / metabolism
  • RNA-Seq
  • Receptors, Calcium-Sensing / genetics
  • Receptors, Calcium-Sensing / metabolism
  • TOR Serine-Threonine Kinases / genetics
  • TOR Serine-Threonine Kinases / metabolism
  • Tissue Banks
  • Transcriptome*

Substances

  • CASR protein, human
  • Cadherins
  • FAT1 protein, human
  • Kruppel-Like Transcription Factors
  • MEN1 protein, human
  • Proto-Oncogene Proteins
  • Receptors, Calcium-Sensing
  • zinc finger protein, X-linked
  • EZH1 protein, human
  • EZH2 protein, human
  • Enhancer of Zeste Homolog 2 Protein
  • Polycomb Repressive Complex 2
  • MTOR protein, human
  • TOR Serine-Threonine Kinases