Integration of NMR studies, computational predictions, and in vitro assays in the search of marine diterpenes with antitumor activity

Chem Biol Drug Des. 2021 Oct;98(4):507-521. doi: 10.1111/cbdd.13907. Epub 2021 Jul 23.

Abstract

Among the compounds of natural origin, diterpenes have proved useful as drugs for the treatment of cancer. Marine organisms, such as soft corals and algae, are a promising source of diterpenes, being a rich and unexplored source of cytotoxic agents. This study evaluated a library of 32 natural and semisynthetic marine diterpenes, including briarane, cembrane, and dolabellane nuclei, with the aim of determining their cytotoxicity against three human cancer cell lines (A549, MCF7, and PC3). The three most active compounds were submitted to a flow cytometry analysis in order to determine induction of apoptosis against the A549 cell line. An NMR analysis was conducted to determine and evaluate the interactions between active diterpenes and tubulin. These interactions were characterized by a computational study using molecular docking and MD simulations. With these results, two cembrane and one chlorinated briarane diterpenes were active against the three human cancer cell lines, induced apoptosis in the A549 cell line, and showed interactions with tubulin preferably at the taxane-binding site. This study is a starting point for the identification and optimization of the marine diterpenes selected for better antitumor activities. It also highlights the power of integrating NMR studies, computational predictions, and in vitro assays in the search for compounds with antitumor activity.

Keywords: STD NMR; apoptosis; cancer; computational methods; marine diterpenes; tubulin stabilizers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anthozoa / chemistry*
  • Antineoplastic Agents / chemistry*
  • Antineoplastic Agents / pharmacology
  • Apoptosis / drug effects
  • Biological Products / chemistry*
  • Biological Products / pharmacology
  • Cell Line, Tumor
  • Complex Mixtures / chemistry*
  • Complex Mixtures / pharmacology
  • Computational Biology
  • Diterpenes / chemistry*
  • Diterpenes / pharmacology
  • Drug Screening Assays, Antitumor
  • Halogenation
  • Humans
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Small Molecule Libraries / chemistry*
  • Small Molecule Libraries / pharmacology
  • Structure-Activity Relationship

Substances

  • Antineoplastic Agents
  • Biological Products
  • Complex Mixtures
  • Diterpenes
  • Small Molecule Libraries