A small peptide inhibits siRNA amplification in plants by mediating autophagic degradation of SGS3/RDR6 bodies

EMBO J. 2021 Aug 2;40(15):e108050. doi: 10.15252/embj.2021108050. Epub 2021 Jun 22.

Abstract

Selective autophagy mediates specific degradation of unwanted cytoplasmic components to maintain cellular homeostasis. The suppressor of gene silencing 3 (SGS3) and RNA-dependent RNA polymerase 6 (RDR6)-formed bodies (SGS3/RDR6 bodies) are essential for siRNA amplification in planta. However, whether autophagy receptors regulate selective turnover of SGS3/RDR6 bodies is unknown. By analyzing the transcriptomic response to virus infection in Arabidopsis, we identified a virus-induced small peptide 1 (VISP1) composed of 71 amino acids, which harbor a ubiquitin-interacting motif that mediates interaction with autophagy-related protein 8. Overexpression of VISP1 induced selective autophagy and compromised antiviral immunity by inhibiting SGS3/RDR6-dependent viral siRNA amplification, whereas visp1 mutants exhibited opposite effects. Biochemistry assays demonstrate that VISP1 interacted with SGS3 and mediated autophagic degradation of SGS3/RDR6 bodies. Further analyses revealed that overexpression of VISP1, mimicking the sgs3 mutant, impaired biogenesis of endogenous trans-acting siRNAs and up-regulated their targets. Collectively, we propose that VISP1 is a small peptide receptor functioning in the crosstalk between selective autophagy and RNA silencing.

Keywords: RNA silencing; SGS3; autophagy; peptide; plant virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / immunology*
  • Arabidopsis / metabolism
  • Arabidopsis / virology
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism*
  • Autophagosomes / physiology
  • Autophagy / physiology
  • Autophagy-Related Protein 8 Family / metabolism
  • Gene Expression Regulation, Plant
  • Mutation
  • Nicotiana / genetics
  • Peptides / genetics*
  • Peptides / metabolism
  • Plant Immunity
  • Plants, Genetically Modified
  • RNA, Small Interfering
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / metabolism*

Substances

  • ATG8 protein, Arabidopsis
  • Arabidopsis Proteins
  • Autophagy-Related Protein 8 Family
  • Peptides
  • RNA, Small Interfering
  • SGS3 protein, Arabidopsis
  • RDR6 protein, Arabidopsis
  • RNA-Dependent RNA Polymerase