Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts

PLoS Comput Biol. 2021 Jul 20;17(7):e1009228. doi: 10.1371/journal.pcbi.1009228. eCollection 2021 Jul.

Abstract

During the last ten years, many research results have been referring to a particular type of cancer-associated fibroblasts associated with poor prognosis, invasiveness, metastasis and resistance to therapy in multiple cancer types, characterized by a gene expression signature with prominent presence of genes COL11A1, THBS2 and INHBA. Identifying the underlying biological mechanisms responsible for their creation may facilitate the discovery of targets for potential pan-cancer therapeutics. Using a novel computational approach for single-cell gene expression data analysis identifying the dominant cell populations in a sequence of samples from patients at various stages, we conclude that these fibroblasts are produced by a pan-cancer cellular transition originating from a particular type of adipose-derived stromal cells naturally present in the stromal vascular fraction of normal adipose tissue, having a characteristic gene expression signature. Focusing on a rich pancreatic cancer dataset, we provide a detailed description of the continuous modification of the gene expression profiles of cells as they transition from APOD-expressing adipose-derived stromal cells to COL11A1-expressing cancer-associated fibroblasts, identifying the key genes that participate in this transition. These results also provide an explanation to the well-known fact that the adipose microenvironment contributes to cancer progression.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Adipose Tissue / metabolism
  • Adipose Tissue / pathology
  • Biomarkers, Tumor* / genetics
  • Breast Neoplasms / genetics
  • Breast Neoplasms / pathology
  • Cancer-Associated Fibroblasts* / metabolism
  • Cancer-Associated Fibroblasts* / pathology
  • Carcinoma, Pancreatic Ductal / genetics
  • Carcinoma, Pancreatic Ductal / pathology
  • Collagen Type XI* / genetics
  • Computational Biology
  • Databases, Factual
  • Databases, Genetic
  • Disease Progression
  • Female
  • Gene Expression Regulation, Neoplastic
  • Head and Neck Neoplasms / genetics
  • Head and Neck Neoplasms / pathology
  • Humans
  • Lung Neoplasms / genetics
  • Lung Neoplasms / pathology
  • Mesenchymal Stem Cells / metabolism
  • Mesenchymal Stem Cells / pathology
  • Neoplasm Invasiveness* / genetics
  • Neoplasm Invasiveness* / pathology
  • Neoplasm Invasiveness* / prevention & control
  • Neoplasms* / genetics
  • Neoplasms* / pathology
  • Ovarian Neoplasms / genetics
  • Ovarian Neoplasms / pathology
  • Pancreatic Neoplasms / genetics
  • Pancreatic Neoplasms / pathology
  • Single-Cell Analysis
  • Stromal Cells / metabolism
  • Stromal Cells / pathology
  • Transcriptome
  • Tumor Microenvironment / genetics

Substances

  • Biomarkers, Tumor
  • COL11A1 protein, human
  • Collagen Type XI