G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story

Int J Mol Sci. 2021 Jul 9;22(14):7381. doi: 10.3390/ijms22147381.

Abstract

G-quadruplexes have long been perceived as rare and physiologically unimportant nucleic acid structures. However, several studies have revealed their importance in molecular processes, suggesting their possible role in replication and gene expression regulation. Pathways involving G-quadruplexes are intensively studied, especially in the context of human diseases, while their involvement in gene expression regulation in plants remains largely unexplored. Here, we conducted a bioinformatic study and performed a complex circular dichroism measurement to identify a stable G-quadruplex in the gene RPB1, coding for the RNA polymerase II large subunit. We found that this G-quadruplex-forming locus is highly evolutionarily conserved amongst plants sensu lato (Archaeplastida) that share a common ancestor more than one billion years old. Finally, we discussed a new hypothesis regarding G-quadruplexes interacting with UV light in plants to potentially form an additional layer of the regulatory network.

Keywords: UV light; circular dichroism; evolution; nucleic acids; plant science.

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis / chemistry
  • Arabidopsis / genetics
  • Arabidopsis / radiation effects
  • Circular Dichroism
  • Computational Biology
  • Evolution, Molecular
  • G-Quadruplexes* / radiation effects
  • Gene Expression Regulation, Plant / genetics
  • Glaucophyta / chemistry
  • Glaucophyta / genetics
  • Glaucophyta / radiation effects
  • Phylogeny
  • Plant Proteins / chemistry*
  • Plant Proteins / genetics
  • Plant Proteins / radiation effects
  • Plants / chemistry*
  • Plants / genetics
  • Plants / radiation effects
  • RNA Polymerase II / chemistry*
  • RNA Polymerase II / genetics
  • Rhodophyta / chemistry
  • Rhodophyta / genetics
  • Rhodophyta / radiation effects
  • Sequence Alignment
  • Ultraviolet Rays

Substances

  • Plant Proteins
  • RNA Polymerase II