Identification of LOXL3-associating immune infiltration landscape and prognostic value in hepatocellular carcinoma

Virchows Arch. 2021 Dec;479(6):1153-1165. doi: 10.1007/s00428-021-03193-4. Epub 2021 Aug 27.

Abstract

In recent years, breakthroughs in the field of tumor immunotherapy with immune checkpoint inhibitors (ICIs) have made a therapeutic revolution, which has been shown to improve the prognosis of patients with hepatocellular carcinoma (HCC). Immune infiltrates represent a major component of tumor microenvironment (TME), and play an essential role in both tumor progression and therapeutic response. The major unmet challenge in tumor immunotherapy is exploring the intrinsic and extrinsic mechanisms of TME promoting the management of HCC. Lysyl oxidase like 3 (LOXL3) participates in the remodeling of extracellular matrix (ECM) and the cross-linking of collagen and elastic fibers. It has been reported that LOXL3 is associated with the development and tumorigenesis of multiple types of cancer. RNA sequencing data and corresponding clinical information were extracted from The Cancer Genome Atlas (TCGA) databases, then subjected to gene expression, tumor microenvironment, survival, enrichment analyses utilizing R packages. In this study, we first found that LOXL3 gene was upregulated in tumor tissues compared with the normal tissues. Furthermore, LOXL3 expression is positively correlated with the infiltration of multiple immune cells and the expression of immune checkpoint genes in HCC. Meanwhile, high LOXL3 expression predicted poor outcomes of the patients with HCC. Functional enrichment analysis suggested that LOXL3 was mainly linked to extracellular structure and matrix organization, cell-cell adhesion, and T cell activation. This is the first comprehensive study to indicate that LOXL3 is correlated with immune infiltrates and may serve as a novel biomarker predicting prognosis and immunotherapy in HCC.

Keywords: HCC; Immune infiltrate; Immunotherapy; LOXL3; Prognosis.

MeSH terms

  • Amino Acid Oxidoreductases / analysis*
  • Amino Acid Oxidoreductases / genetics
  • Biomarkers, Tumor / analysis*
  • Biomarkers, Tumor / genetics
  • Carcinoma, Hepatocellular / enzymology*
  • Carcinoma, Hepatocellular / genetics
  • Carcinoma, Hepatocellular / immunology
  • Carcinoma, Hepatocellular / pathology
  • DNA Damage
  • DNA Methylation
  • DNA Repair
  • Databases, Genetic
  • Humans
  • Immune Checkpoint Proteins / genetics
  • Liver Neoplasms / enzymology*
  • Liver Neoplasms / genetics
  • Liver Neoplasms / immunology
  • Liver Neoplasms / pathology
  • Lymphocytes, Tumor-Infiltrating / enzymology*
  • Lymphocytes, Tumor-Infiltrating / immunology
  • Prognosis
  • Tumor Microenvironment*
  • Up-Regulation

Substances

  • Biomarkers, Tumor
  • Immune Checkpoint Proteins
  • Amino Acid Oxidoreductases
  • LOXL3 protein, human