Exploration of differentially-expressed exosomal mRNAs, lncRNAs and circRNAs from serum samples of gallbladder cancer and xantho-granulomatous cholecystitis patients

Bioengineered. 2021 Dec;12(1):6134-6143. doi: 10.1080/21655979.2021.1972780.

Abstract

Gallbladder cancer (GBC) is the most common biliary tract malignancy worldwide. Although a growing number of studies have explored the mechanism of GBC, thus far, few molecules have been discovered that can be utilized as specific biomarkers for the early diagnosis and therapeutic treatment of GBC. Recent studies have shown that exosomes not only participate in the progression of tumors, but also carry specific information that can define multiple cancer types. The present study investigated the expression profiles of coding (or messenger) ribonucleic acids (mRNAs) and non-coding RNAs (ncRNAs, including long non-coding RNAs [lncRNAs] and circular RNAs [circRNAs]) in plasma-derived exosomes from GBC patients. Using high-throughput RNA sequencing and subsequent bioinformatic analysis, a number of differentially expressed (DE) mRNAs, lncRNAs, and circRNAs were identified in GBC exosomes, compared to their expressions in xantho-granulomatous cholecystitis (XGC) exosomes. Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) analyses were then conducted to investigate the potential functions of these DE RNAs. Furthermore, the interaction networks and competing endogenous RNA networks of these DE RNAs and their target genes were investigated, revealing a complex regulatory network among mRNAs and ncRNAs. In summary, this study demonstrates the diagnostic value of plasma-derived exosomes in GBC and provides a new perspective on the mechanism of GBC.

Keywords: Gallbladder cancer; circRNA; exosome; lncRNA; mRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cholecystitis / blood
  • Cholecystitis / diagnosis
  • Cholecystitis / genetics
  • Cholecystitis / metabolism*
  • Exosomes / chemistry
  • Exosomes / metabolism*
  • Gallbladder Neoplasms / blood
  • Gallbladder Neoplasms / diagnosis
  • Gallbladder Neoplasms / genetics
  • Gallbladder Neoplasms / metabolism*
  • Humans
  • Protein Interaction Maps / genetics
  • RNA* / blood
  • RNA* / genetics
  • RNA* / metabolism
  • Transcriptome / genetics*
  • Xanthomatosis / blood
  • Xanthomatosis / diagnosis
  • Xanthomatosis / genetics
  • Xanthomatosis / metabolism*

Substances

  • RNA

Supplementary concepts

  • Xanthogranulomatous cholecystitis

Grants and funding

This study is supported by Guangci Excellent Youth Program of Ruijin Hospital (Grant No. GCQN-2019-B05), Interdisciplinary Program of Shanghai Jiao Tong University (Grant No. ZH2018QNA49), Shanghai Sailing Program (Grant No. 20YF1427600) and National Nature Science Foundation of China (Grant No. 82002464). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript