Gene.iobio: an interactive web tool for versatile, clinically-driven variant interrogation and prioritization

Sci Rep. 2021 Oct 13;11(1):20307. doi: 10.1038/s41598-021-99752-5.

Abstract

With increasing utilization of comprehensive genomic data to guide clinical care, anticipated to become the standard of care in many clinical settings, the practice of diagnostic medicine is undergoing a notable shift. However, the move from single-gene or panel-based genetic testing to exome and genome sequencing has not been matched by the development of tools to enable diagnosticians to interpret increasingly complex or uncertain genomic findings. Here, we present gene.iobio, a real-time, intuitive and interactive web application for clinically-driven variant interrogation and prioritization. We show gene.iobio is a novel and effective approach that significantly improves upon and reimagines existing methods. In a radical departure from existing methods that present variants and genomic data in text and table formats, gene.iobio provides an interactive, intuitive and visually-driven analysis environment. We demonstrate that adoption of gene.iobio in clinical and research settings empowers clinical care providers to interact directly with patient genomic data both for establishing clinical diagnoses and informing patient care, using sophisticated genomic analyses that previously were only accessible via complex command line tools.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adult
  • Algorithms
  • Alleles
  • Computational Biology / methods*
  • Databases, Genetic
  • Exome
  • Exome Sequencing
  • Genetic Testing
  • Genomics / methods*
  • Humans
  • Internet
  • Male
  • Phenotype
  • Receptors, Cell Surface / genetics
  • Sequence Analysis, DNA
  • Software
  • Vacuolar Proton-Translocating ATPases / genetics

Substances

  • ATP6AP2 protein, human
  • Receptors, Cell Surface
  • Vacuolar Proton-Translocating ATPases