Interactions in Ternary Aqueous Solutions of NMA and Osmolytes-PARAFAC Decomposition of FTIR Spectra Series

Int J Mol Sci. 2021 Oct 28;22(21):11684. doi: 10.3390/ijms222111684.

Abstract

Intermolecular interactions in aqueous solutions are crucial for virtually all processes in living cells. ATR-FTIR spectroscopy is a technique that allows changes caused by many types of such interactions to be registered; however, binary solutions are sometimes difficult to solve in these terms, while ternary solutions are even more difficult. Here, we present a method of data pretreatment that facilitates the use of the Parallel Factor Analysis (PARAFAC) decomposition of ternary solution spectra into parts that are easier to analyze. Systems of the NMA-water-osmolyte-type were used to test the method and to elucidate information on the interactions between N-Methylacetamide (NMA, a simple peptide model) with stabilizing (trimethylamine N-oxide, glycine, glycine betaine) and destabilizing osmolytes (n-butylurea and tetramethylurea). Systems that contain stabilizers change their vibrational structure to a lesser extent than those with denaturants. Changes in the latter are strong and can be related to the formation of direct NMA-destabilizer interactions.

Keywords: FTIR spectroscopy; N-methylacetamide; PARAFAC; osmolytes; weak interactions.

Publication types

  • Evaluation Study

MeSH terms

  • Acetamides / chemistry*
  • Factor Analysis, Statistical
  • Spectroscopy, Fourier Transform Infrared*

Substances

  • Acetamides
  • N-methylacetamide