Genotypic and allelic distribution of IFN-γ +874T/A and TGF-β1 -509C/T single-nucleotide polymorphisms in human immunodeficiency virus-infected Thais

J Med Virol. 2022 Jun;94(6):2882-2886. doi: 10.1002/jmv.27567. Epub 2022 Jan 19.

Abstract

Advances in antiretroviral therapy (ART) have led to a decrease of acquired immunodeficiency syndrome (AIDS)-related mortality, and an increase of non-AIDS illnesses in people living with HIV (PLWH). Risks for HIV-related chronic inflammation leading to non-AIDS illnesses in PLWH have been increasingly clarified including immunogenetic factors. This study aimed to examine distribution of genotypic and allelic frequencies of the well-characterized interferon-γ (IFN-γ) +874T/A and transforming growth factor-β1 (TGF-β1) -509C/T single nucleotide polymorphisms (SNPs) in Thai PLWH. The cross-sectional study was conducted in 191 Thai HIV patients. Most patients were under ART (74.3%) and maintained a relatively high median of CD4+ cell count (364.5 [5-1601] cells/μl). The frequencies of IFN-γ +874T/A SNP genotypes were 9.0% AA, 38.3% AT, and 52.7% TT and those of the SNP alleles were 28.1% A and 71.9% T. The rates of TGF-β1-509C/T SNP genotypes were 15.7% CC, 44.0% CT, and 40.3% TT and those of the SNP alleles were 37.7% C and 62.3% T. The more frequent TT genotypes and T allele of the IFN-γ +874T/A SNP, and relatively more prevalent TT and CT genotypes and T allele of TGF-β1 -509C/T SNP were potentially associated with disease progression to non-AIDS complication in Thai PLWH and required further investigation. This study provides the immunogenetic data potentially supporting mechanisms for chronic immune activation in PLWH under long-term suppressive ART.

Keywords: IFN-γ+874T/A; TGF-β1 −509C/T; human immunodeficiency virus; people living with HIV.

MeSH terms

  • Alleles
  • Cross-Sectional Studies
  • Genetic Predisposition to Disease
  • Genotype
  • HIV Infections* / genetics
  • Humans
  • Interferon-gamma* / genetics
  • Polymorphism, Single Nucleotide*
  • Thailand
  • Transforming Growth Factor beta1* / genetics

Substances

  • IFNG protein, human
  • Interferon-gamma
  • TGFB1 protein, human
  • Transforming Growth Factor beta1