Endosomal-associated RFFL facilitates mitochondrial clearance by enhancing PRKN/parkin recruitment to mitochondria

Autophagy. 2022 Dec;18(12):2851-2864. doi: 10.1080/15548627.2022.2052460. Epub 2022 Apr 3.

Abstract

Mutations in the ubiquitin ligase PRKN (parkin RBR E3 ubiquitin protein ligase) are associated with Parkinson disease and defective mitophagy. Conceptually, PRKN-dependent mitophagy is classified into two phases: 1. PRKN recruits to and ubiquitinates mitochondrial proteins; 2. formation of phagophore membrane, sequestering mitochondria for degradation. Recently, endosomal machineries are reported to contribute to the later stage for membrane assembly. We reported a role for endosomes in the events upstream of phase 1. We demonstrate that the endosomal ubiquitin ligase RFFL (ring finger and FYVE like domain containing E3 ubiquitin protein ligase) associated with damaged mitochondria, and this association preceded that of PRKN. RFFL interacted with PRKN, and stable recruitment of PRKN to damaged mitochondria was substantially reduced in RFFL KO cells. Our study unraveled a novel role of endosomes in modulating upstream pathways of PRKN-dependent mitophagy initiation.Abbreviations CCCP: carbonyl cyanide 3-chlorophenylhydrazone; DMSO: dimethyl sulfoxide; EGFP: enhanced green fluorescence protein; KO: knockout; PRKN: parkin RBR E3 ubiquitin protein ligase; RFFL: ring finger and FYVE like domain containing E3 ubiquitin protein ligase; UQCRC1: ubiquinol-cytochrome c reductase core protein 1; WT: wild-type.

Keywords: Endosomes; PRKN; RFFL; mitophagy; ubiquitin ligases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Autophagy*
  • Endosomes / metabolism
  • Mitochondria / metabolism
  • Protein Kinases* / metabolism
  • Ubiquitin / metabolism
  • Ubiquitin-Protein Ligases / metabolism

Substances

  • Protein Kinases
  • Ubiquitin-Protein Ligases
  • Ubiquitin

Grants and funding

This work was supported by the Department of Biotechnology grant [BT/PR21325/BRB/10/1554/2016]; Department of Science and Technology, Science and Engineering Research Board (DST-SERB) [IPA/2020/000070]; DST-INSPIRE [DST/INSPIRE Fellowship/2015/IF150947]; Department of Science and Technology-Science and Engineering Research Board (DST-SERB) grant [EMR/2016/008048].