Signaling from the RNA sensor RIG-I is regulated by ufmylation

Proc Natl Acad Sci U S A. 2022 Apr 12;119(15):e2119531119. doi: 10.1073/pnas.2119531119. Epub 2022 Apr 8.

Abstract

The RNA-binding protein RIG-I is a key initiator of the antiviral innate immune response. The signaling that mediates the antiviral response downstream of RIG-I is transduced through the adaptor protein MAVS and results in the induction of type I and III interferons (IFNs). This signal transduction occurs at endoplasmic reticulum (ER)–mitochondrial contact sites, to which RIG-I and other signaling proteins are recruited following their activation. RIG-I signaling is highly regulated to prevent aberrant activation of this pathway and dysregulated induction of IFN. Previously, we identified UFL1, the E3 ligase of the ubiquitin-like modifier conjugation system called ufmylation, as one of the proteins recruited to membranes at ER–mitochondrial contact sites in response to RIG-I activation. Here, we show that UFL1, as well as the process of ufmylation, promote IFN induction in response to RIG-I activation. We found that following RNA virus infection, UFL1 is recruited to the membrane-targeting protein 14–3-3ε and that this complex is then recruited to activated RIG-I to promote downstream innate immune signaling. Importantly, we found that 14–3-3ε has an increase in UFM1 conjugation following RIG-I activation. Additionally, loss of cellular ufmylation prevents the interaction of 14–3-3ε with RIG-I, which abrogates the interaction of RIG-I with MAVS and thus the downstream signal transduction that induces IFN. Our results define ufmylation as an integral regulatory component of the RIG-I signaling pathway and as a posttranslational control for IFN induction.

Keywords: RLR signaling; mitochondrial-associated ER membranes; retinoic acid-inducible gene I; ubiquitin-like modifications.

MeSH terms

  • 14-3-3 Proteins / metabolism
  • DEAD Box Protein 58* / metabolism
  • Humans
  • Immunity, Innate
  • Interferons* / metabolism
  • RNA Virus Infections* / genetics
  • RNA Virus Infections* / immunology
  • RNA, Viral* / metabolism
  • Receptors, Immunologic* / metabolism
  • Signal Transduction
  • Ubiquitin-Protein Ligases* / metabolism

Substances

  • 14-3-3 Proteins
  • RNA, Viral
  • Receptors, Immunologic
  • YWHAE protein, human
  • Interferons
  • Ubiquitin-Protein Ligases
  • RIGI protein, human
  • DEAD Box Protein 58
  • UFL1 protein, human