Discovery of eQTL Alleles Associated with Autism Spectrum Disorder: A Case-Control Study

J Autism Dev Disord. 2023 Sep;53(9):3595-3612. doi: 10.1007/s10803-022-05631-x. Epub 2022 Jun 23.

Abstract

Autism Spectrum Disorder (ASD) is a complex neurodevelopmental disorder characterized by challenges in social communication as well as repetitive or restrictive behaviors. Many genetic associations with ASD have been identified, but most associations occur in a fraction of the ASD population. Here, we searched for eQTL-associated DNA variants with significantly different allele distributions between ASD-affected and control. Thirty significant DNA variants associated with 174 tissue-specific eQTLs from ASD individuals in the SPARK project were identified. Several significant variants fell within brain-specific regulatory regions or had been associated with a significant change in gene expression in the brain. These eQTLs are a new class of biomarkers that could control the myriad of brain and non-brain phenotypic traits seen in ASD-affected individuals.

Keywords: Autism spectrum disorder; Classification; Neural network; eQTLs.

MeSH terms

  • Alleles
  • Autism Spectrum Disorder* / genetics
  • Brain
  • Case-Control Studies
  • Humans
  • Phenotype