Integrated metabolomics and transcriptome analysis on flavonoid biosynthesis in flowers of safflower (Carthamus tinctorius L.) during colour-transition

PeerJ. 2022 Jun 22:10:e13591. doi: 10.7717/peerj.13591. eCollection 2022.

Abstract

Background: Safflower (Carthamus tinctorius L.), well known for its flower, is widely used as a dye and traditional Chinese medicine. Flavonoids, especially flavonoid glycosides, are the main pigments and active components. However, their biosynthesis is largely unknown. Interestingly, the colour of flowers in safflower changed from yellow to red during flower development, while much of the gene and chemical bases during colour transition are unclear.

Methods: In this research, widely targeted metabolomics and transcriptomics were used to elucidate the changes in flavonoid biosynthesis from the gene and chemical points of view in flowers of safflower during colour transition. The screening of differential metabolites depended on fold change and variable importance in project (VIP) value. Differential expressed genes (DEGs) were screened by DESeq2 method. RT-PCR was used to analyse relative expressions of DEGs.

Results: A total of 212 flavonoid metabolites, including hydroxysafflor yellow A, carthamin and anthocyanins, were detected and showed a large difference. The candidate genes of glycosyltransferases and flavonoid hydroxylase that might participate in flavonoid glycoside biosynthesis were screened. Ten candidate genes were screened. Through integrated metabolomics and transcriptome analysis, a uridine diphosphate glucose glycosyltransferase gene, CtUGT9 showed a significant correlation with flavonoid glycosides in safflower. In addition, expression analysis showed that CtUGT9 was mainly expressed in the middle development of flowers and was significantly upregulated under MeJA treatment. Our results indicated that CtUGT9 might play an important role in flavonoid glycoside biosynthesis during colour-transition in safflower.

Keywords: Colour-transition; Flavonoid glycosides biosythesis; Glycosyltransferases; Metabolomics; Safflower; Transcriptome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anthocyanins / metabolism
  • Carthamus tinctorius* / genetics
  • Color
  • Flavonoids
  • Flowers / genetics
  • Gene Expression Profiling
  • Glycosides / metabolism
  • Metabolomics

Substances

  • Anthocyanins
  • Flavonoids
  • Glycosides

Grants and funding

This project is funded by grants from the National Natural Science Foundation of China (81803669, U19A2010), the Key R&D Plan of Science and Technology Department of Sichuan Province (2021YFYZ0012-5, 2020YFN0152), the Sichuan Provincial central guiding local science and technology development special project (2020ZYD058), and the Xinglin Talent Program of Chengdu University of TCM (0300510007). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.