Single-cell immunoprofiling after immunotherapy for allergic rhinitis reveals functional suppression of pathogenic TH2 cells and clonal conversion

J Allergy Clin Immunol. 2022 Oct;150(4):850-860.e5. doi: 10.1016/j.jaci.2022.06.024. Epub 2022 Jul 19.

Abstract

Background: Allergic rhinitis is a growing problem worldwide. Currently the only treatment that can modify the disease is antigen-specific immunotherapy, but its mechanism of action is not fully understood.

Objective: We comprehensively investigated the role and changes of antigen-specific T cells before and after sublingual immunotherapy (SLIT) for Japanese cedar pollinosis.

Methods: We cultured peripheral blood mononuclear cells obtained both before and 1 year after initiating SLIT and used a combination of single-cell RNA sequencing and repertoire sequencing. To investigate biomarkers, we used cells from patients participating a phase 2/3 trial of SLIT tablets for Japanese cedar pollinosis and cells from outpatients with good and poor response.

Results: Antigen-stimulated culturing after SLIT led to clonal expansion of TH2 and regulatory T cells, and most of these CD4+ T cells retained their CDR3 regions before and after treatment, indicating antigen-specific clonal responses and differentiation resulting from SLIT. However, SLIT reduced the number of clonal functional TH2 cells but increased the trans-type TH2 cell population that expresses musculin (MSC), TGF-β, and IL-2. Trajectory analysis suggested that SLIT induced clonal differentiation of the trans-type TH2 cells differentiated into regulatory T cells. Using real-time PCR, we found that the MSC levels increased in the active SLIT group and those with good response after 1 year of treatment.

Conclusion: The combination of single-cell RNA sequencing and repertoire analysis helped reveal part of the underlying mechanism: SLIT promotes the expression of MSC on pathogenic TH2 cells and suppresses their function. MSC may be a potential biomarker of SLIT for allergic rhinitis.

Keywords: Allergic rhinitis; Japanese cedar pollinosis; T cell; musculin; repertoire sequencing; single-cell RNA sequencing; sublingual immunotherapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allergens
  • Biomarkers
  • Cryptomeria*
  • Humans
  • Immunologic Factors
  • Interleukin-2
  • Leukocytes, Mononuclear
  • Rhinitis, Allergic* / metabolism
  • Rhinitis, Allergic* / therapy
  • Rhinitis, Allergic, Seasonal* / therapy
  • Sublingual Immunotherapy* / methods
  • Transforming Growth Factor beta

Substances

  • Allergens
  • Biomarkers
  • Immunologic Factors
  • Interleukin-2
  • Transforming Growth Factor beta