Machine learning for the micropeptide encoded by LINC02381 regulates ferroptosis through the glucose transporter SLC2A10 in glioblastoma

BMC Cancer. 2022 Aug 12;22(1):882. doi: 10.1186/s12885-022-09972-9.

Abstract

Glioblastoma (GBM) is the most common primary intracranial tumor in the central nervous system, and resistance to temozolomide is an important reason for the failure of GBM treatment. We screened out that Solute Carrier Family 2 Member 10 (SLC2A10) is significantly highly expressed in GBM with a poor prognosis, which is also enriched in the NF-E2 p45-related factor 2 (NRF2) signalling pathway. The NRF2 signalling pathway is an important defence mechanism against ferroptosis. SLC2A10 related LINC02381 is highly expressed in GBM, which is localized in the cytoplasm/exosomes, and LINC02381 encoded micropeptides are localized in the exosomes. The micropeptide encoded by LINC02381 may be a potential treatment strategy for GBM, but the underlying mechanism of its function is not precise yet. We put forward the hypothesis: "The micropeptide encoded by LINC02381 regulates ferroptosis through the glucose transporter SLC2A10 in GBM." This study innovatively used machine learning for micropeptide to provide personalized diagnosis and treatment plans for precise treatment of GBM, thereby promoting the development of translational medicine. The study aimed to help find new disease diagnoses and prognostic biomarkers and provide a new strategy for experimental scientists to design the downstream validation experiments.

Keywords: Glioblastoma; LINC02381; Micropeptide; NRF2; SLC2A10.

MeSH terms

  • Brain Neoplasms* / pathology
  • Cell Line, Tumor
  • Drug Resistance, Neoplasm
  • Ferroptosis* / genetics
  • Gene Expression Regulation, Neoplastic
  • Glioblastoma* / pathology
  • Glucose Transport Proteins, Facilitative / metabolism
  • Humans
  • Machine Learning
  • NF-E2-Related Factor 2 / metabolism

Substances

  • Glucose Transport Proteins, Facilitative
  • NF-E2-Related Factor 2