Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations

Am J Hum Genet. 2022 Sep 1;109(9):1680-1691. doi: 10.1016/j.ajhg.2022.08.001. Epub 2022 Aug 24.


Neisseria meningitidis protects itself from complement-mediated killing by binding complement factor H (FH). Previous studies associated susceptibility to meningococcal disease (MD) with variation in CFH, but the causal variants and underlying mechanism remained unknown. Here we attempted to define the association more accurately by sequencing the CFH-CFHR locus and imputing missing genotypes in previously obtained GWAS datasets of MD-affected individuals of European ancestry and matched controls. We identified a CFHR3 SNP that provides protection from MD (rs75703017, p value = 1.1 × 10-16) by decreasing the concentration of FH in the blood (p value = 1.4 × 10-11). We subsequently used dual-luciferase studies and CRISPR gene editing to establish that deletion of rs75703017 increased FH expression in hepatocyte by preventing promotor inhibition. Our data suggest that reduced concentrations of FH in the blood confer protection from MD; with reduced access to FH, N. meningitidis is less able to shield itself from complement-mediated killing.

Keywords: CFH; CFHR3; Complement; Factor H-related protein; Meningococcal disease; Neisseria meningitidis; factor H; genotyping; in-depth sequencing; infectious disease.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Blood Proteins / genetics
  • Complement Factor H* / genetics
  • Complement System Proteins / genetics
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • Meningococcal Infections* / genetics


  • Blood Proteins
  • CFHR3 protein, human
  • Complement Factor H
  • Complement System Proteins