Distinct and Dynamic Transcriptome Adaptations of iPSC-Generated Astrocytes after Cytokine Stimulation

Cells. 2022 Aug 25;11(17):2644. doi: 10.3390/cells11172644.

Abstract

Astrocytes (ACs) do not only play a role in normal neurogenesis and brain homeostasis, but also in inflammatory and neurodevelopmental disorders. We studied here the different patterns of inflammatory activation triggered by cytokines in human induced pluripotent stem cell (iPSC)-derived ACs. An optimized differentiation protocol provided non-inflamed ACs. These cells reacted to TNFα with a rapid translocation of NFκB, while AC precursors showed little response. Transcriptome changes were quantified at seven time points (2-72 h) after stimulation with TNFα, IFNγ or TNFα plus IFNγ. TNFα triggered a strong response within 2 h. It peaked from 12-24 h and reverted towards the ground state after 72 h. Activation by IFNγ was also rapid, but the response pattern differed from that of TNFα. For instance, several chemokines up-regulated by TNFα were not affected by IFNγ. Instead, MHC-II-related antigen presentation was drastically enhanced. The combination of the two cytokines led to a stronger and more persistent response. For instance, TRIB3 up-regulation by the combination of TNFα plus IFNγ may have slowed NFκB inactivation. Additionally, highly synergistic regulation was observed for inflammation modifiers, such as CASP4, and for STAT1-controlled genes. The combination of the cytokines also increased oxidative stress markers (e.g., CHAC1), led to phenotypic changes in ACs and triggered markers related to cell death. In summary, these data demonstrate that there is a large bandwidth of pro-inflammatory AC states, and that single markers are not suitable to describe AC activation or their modulation in disease, development and therapy.

Keywords: astrocytes; cytokines; dynamic transcriptome changes; iPSC; inflammation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Astrocytes / metabolism
  • Cytokines* / metabolism
  • Humans
  • Induced Pluripotent Stem Cells* / metabolism
  • NF-kappa B / metabolism
  • Transcriptome / genetics
  • Tumor Necrosis Factor-alpha / metabolism

Substances

  • Cytokines
  • NF-kappa B
  • Tumor Necrosis Factor-alpha

Grants and funding

This work was supported by the BMBF, EFSA and the DK-EPA (MST-667-00205). It has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreements No. 681002 (EU-ToxRisk), No. 964537 (RISK-HUNT3R), No. 964518 (ToxFree), No. 825759 (ENDpoiNTs) and from CEFIC under grant No. LRI-AIMT 11.