An intelligent DNA nanorobot for detection of MiRNAs cancer biomarkers using molecular programming to fabricate a logic-responsive hybrid nanostructure

Bioprocess Biosyst Eng. 2022 Nov;45(11):1781-1797. doi: 10.1007/s00449-022-02785-x. Epub 2022 Sep 20.

Abstract

Herein, we designed a DNA framework-based intelligent nanorobot using toehold-mediated strand displacement reaction-based molecular programming and logic gate operation for the selective and synchronous detection of miR21 and miR125b, which are known as significant cancer biomarkers. Moreover, to investigate the applicability of our design, DNA nanorobots were implemented as capping agents onto the pores of MSNs. These agents can develop a logic-responsive hybrid nanostructure capable of specific drug release in the presence of both targets. The prosperous synthesis steps were verified by FTIR, XRD, BET, UV-visible, FESEM-EDX mapping, and HRTEM analyses. Finally, the proper release of the drug in the presence of both target microRNAs was studied. This Hybrid DNA Nanostructure was designed with the possibility to respond to any target oligonucleotides with 22 nucleotides length.

Keywords: Cancer theranostic; DNA nanorobot; Hybrid nanostructure; MiRNA diagnosis; Nucleotides; microRNAs.

MeSH terms

  • Biomarkers, Tumor / genetics
  • DNA / chemistry
  • Humans
  • MicroRNAs* / analysis
  • MicroRNAs* / genetics
  • Nanostructures* / chemistry
  • Neoplasms* / genetics

Substances

  • MicroRNAs
  • Biomarkers, Tumor
  • DNA
  • MIRN21 microRNA, human