Allelic variation of Escherichia coli outer membrane protein A: Impact on cell surface properties, stress tolerance and allele distribution

PLoS One. 2022 Oct 13;17(10):e0276046. doi: 10.1371/journal.pone.0276046. eCollection 2022.

Abstract

Outer membrane protein A (OmpA) is one of the most abundant outer membrane proteins of Gram-negative bacteria and is known to have patterns of sequence variations at certain amino acids-allelic variation-in Escherichia coli. Here we subjected seven exemplar OmpA alleles expressed in a K-12 (MG1655) ΔompA background to further characterization. These alleles were observed to significantly impact cell surface charge (zeta potential), cell surface hydrophobicity, biofilm formation, sensitivity to killing by neutrophil elastase, and specific growth rate at 42°C and in the presence of acetate, demonstrating that OmpA is an attractive target for engineering cell surface properties and industrial phenotypes. It was also observed that cell surface charge and biofilm formation both significantly correlate with cell surface hydrophobicity, a cell property that is increasingly intriguing for bioproduction. While there was poor alignment between the observed experimental values relative to the known sequence variation, differences in hydrophobicity and biofilm formation did correspond to the identity of residue 203 (N vs T), located within the proposed dimerization domain. The relative abundance of the (I, δ) allele was increased in extraintestinal pathogenic E. coli (ExPEC) isolates relative to environmental isolates, with a corresponding decrease in (I, α) alleles in ExPEC relative to environmental isolates. The (I, α) and (I, δ) alleles differ at positions 203 and 251. Variations in distribution were also observed among ExPEC types and phylotypes. Thus, OmpA allelic variation and its influence on OmpA function warrant further investigation.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alleles
  • Amino Acids / metabolism
  • Bacterial Outer Membrane Proteins / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Infections* / microbiology
  • Escherichia coli Proteins* / genetics
  • Escherichia coli Proteins* / metabolism
  • Extraintestinal Pathogenic Escherichia coli* / genetics
  • Humans
  • Leukocyte Elastase / metabolism
  • Surface Properties

Substances

  • Amino Acids
  • Bacterial Outer Membrane Proteins
  • Escherichia coli Proteins
  • OMPA outer membrane proteins
  • Leukocyte Elastase

Grants and funding

Funding for this work was provided by the National Science Foundation (https://www.nsf.gov/) grants CBET-1236510 (MLS) and CBET-1604576 (LRJ), and the Unites States Department of Agriculture National Institute of Food and Agriculture (https://www.nifa.usda.gov/), award number 2017-6702-26137 (LRJ). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.