Ribosome Stalling of N-Linked Glycoproteins in Cell-Free Extracts

ACS Synth Biol. 2022 Dec 16;11(12):3892-3899. doi: 10.1021/acssynbio.2c00311. Epub 2022 Nov 18.

Abstract

Ribosome display is a powerful in vitro method for selection and directed evolution of proteins expressed from combinatorial libraries. However, the ability to display proteins with complex post-translational modifications such as glycosylation is limited. To address this gap, we developed a set of complementary methods for producing stalled ribosome complexes that displayed asparagine-linked (N-linked) glycoproteins in conformations amenable to downstream functional and glycostructural interrogation. The ability to generate glycosylated ribosome-nascent chain (glycoRNC) complexes was enabled by integrating SecM-mediated translation arrest with methods for cell-free N-glycoprotein synthesis. This integration enabled a first-in-kind method for ribosome stalling of target proteins modified efficiently and site-specifically with different N-glycan structures. Moreover, the observation that encoding mRNAs remained stably attached to ribosomes provides evidence of a genotype-glycophenotype link between an arrested glycoprotein and its RNA message. We anticipate that our method will enable selection and evolution of N-glycoproteins with advantageous biological and biophysical properties.

Keywords: asparagine-linked glycosylation; cell-free protein synthesis; directed evolution; protein display technology; protein engineering; synthetic glycobiology.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell Extracts
  • Glycoproteins / genetics
  • Glycoproteins / metabolism
  • Protein Biosynthesis*
  • RNA, Messenger / metabolism
  • Ribosomes* / genetics
  • Ribosomes* / metabolism

Substances

  • Cell Extracts
  • RNA, Messenger
  • Glycoproteins