Treenome Browser: co-visualization of enormous phylogenies and millions of genomes

Alexander M Kramer; Theo Sanderson; Russell Corbett-Detig

doi:10.1093/bioinformatics/btac772

Treenome Browser: co-visualization of enormous phylogenies and millions of genomes

Bioinformatics. 2023 Jan 1;39(1):btac772. doi: 10.1093/bioinformatics/btac772.

Authors

Alexander M Kramer^{1

2}, Theo Sanderson³, Russell Corbett-Detig^{1

2}

Affiliations

¹ Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
² Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
³ The Francis Crick Institute, London NW1 1AT, UK.

Abstract

Summary: Treenome Browser is a web browser tool to interactively visualize millions of genomes alongside huge phylogenetic trees.

Availability and implementation: Treenome Browser for SARS-CoV-2 can be accessed at cov2tree.org, or at taxonium.org for user-provided trees. Source code and documentation are available at github.com/theosanderson/taxonium and docs.taxonium.org/en/latest/treenome.html.

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

COVID-19*
Genome
Genomics*
Humans
Phylogeny
SARS-CoV-2 / genetics
Software

Abstract

Publication types

MeSH terms

Grants and funding