MycoCosm, the JGI's Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses

Steven R Ahrendt; Stephen J Mondo; Sajeet Haridas; Igor V Grigoriev

doi:10.1007/978-1-0716-2871-3_14

MycoCosm, the JGI's Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses

Methods Mol Biol. 2023:2605:271-291. doi: 10.1007/978-1-0716-2871-3_14.

Authors

Steven R Ahrendt¹, Stephen J Mondo¹, Sajeet Haridas¹, Igor V Grigoriev²

Affiliations

¹ U.S Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
² U.S Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. ivgrigoriev@lbl.gov.

PMID: 36520399
DOI: 10.1007/978-1-0716-2871-3_14

Abstract

MycoCosm ( https://mycocosm.jgi.doe.gov/ ) is an integrated fungal genomics portal that currently includes over 2000 fungal genomes. Efficiently exploring these genomes allows the scientific community to address challenges associated with energy and the environment. Here, we provide examples and guidelines for navigating around MycoCosm, and for using a variety of analysis tools to compare genomics and other "omics" data from the fungus Neocallimastix californiae with its relatives.

Keywords: Fungi; Genomics; Multi-omics.

MeSH terms

Data Analysis
Fungi / genetics
Genome, Fungal / genetics
Genomics*
Multiomics*