A Spike-destructing human antibody effectively neutralizes Omicron-included SARS-CoV-2 variants with therapeutic efficacy

PLoS Pathog. 2023 Jan 27;19(1):e1011085. doi: 10.1371/journal.ppat.1011085. eCollection 2023 Jan.

Abstract

Neutralizing antibodies (nAbs) are important assets to fight COVID-19, but most existing nAbs lose the activities against Omicron subvariants. Here, we report a human monoclonal antibody (Ab08) isolated from a convalescent patient infected with the prototype strain (Wuhan-Hu-1). Ab08 binds to the receptor-binding domain (RBD) with pico-molar affinity (230 pM), effectively neutralizes SARS-CoV-2 and variants of concern (VOCs) including Alpha, Beta, Gamma, Mu, Omicron BA.1 and BA.2, and to a lesser extent for Delta and Omicron BA.4/BA.5 which bear the L452R mutation. Of medical importance, Ab08 shows therapeutic efficacy in SARS-CoV-2-infected hACE2 mice. X-ray crystallography of the Ab08-RBD complex reveals an antibody footprint largely in the β-strand core and away from the ACE2-binding motif. Negative staining electron-microscopy suggests a neutralizing mechanism through which Ab08 destructs the Spike trimer. Together, our work identifies a nAb with therapeutic potential for COVID-19.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antibodies, Monoclonal* / pharmacology
  • Antibodies, Monoclonal* / therapeutic use
  • Antibodies, Neutralizing / therapeutic use
  • Antibodies, Viral / therapeutic use
  • COVID-19*
  • Humans
  • Mice
  • SARS-CoV-2*
  • Spike Glycoprotein, Coronavirus / genetics

Substances

  • Antibodies, Monoclonal
  • Antibodies, Neutralizing
  • Antibodies, Viral
  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2

Supplementary concepts

  • SARS-CoV-2 variants

Grants and funding

This study was supported by the National Key Research and Development Program of China (2021YFE0200600, to X.M.Z.); the CAS Strategic Priority Research Program (XDPB0303, to X.M.Z.; XDB37020204, to D.Li); the National Natural Science Foundation of China (82151215, to D.Li), Shanghai Municipal Science and Technology Major Project (Nos. 2019SHZDZX02 and HS2021SHZX001, to X.M.Z.); Science and Technology Commission of Shanghai Municipality (22ZR1468300 D.Li); Innovation Capacity Building Project of Jiangsu province (No. BM2020019, to X.M.Z.); Institut Pasteur International Network SARS-CoV-2 Project (to X.M.Z.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.