Phosducin-like 3 is a novel prognostic and onco-immunological biomarker in glioma: A multi-omics analysis with experimental verification

Front Immunol. 2023 Mar 15:14:1128151. doi: 10.3389/fimmu.2023.1128151. eCollection 2023.

Abstract

Malignant glioma is the most frequent primary tumor of the central nervous system. PDCL3 is a member of the phosducin-like protein family, and its imbalance has been shown to be associated with several human diseases. However, the underlying role of PDCL3 in human malignant cancers, especially in malignant gliomas, is unclear. In this study, we combined public database analysis and experimental verification to explore the differential expression, prognostic value and potential functions and mechanisms of PDCL3. The results revealed that PDCL3 is upregulated in multiple cancers and acts as a potential prognostic biomarker of glioma. Mechanistically, PDCL3 expression is associated with epigenetic modifications and genetic mutations. PDCL3 may directly interact with the chaperonin-containing TCP1 complex, regulating cell malignancy, cell communication and the extracellular matrix. More importantly, the association of PDCL3 with the infiltration of immune cells, immunomodulatory genes, immune checkpoints, cancer stemness and angiogenesis suggested that PDCL3 may regulate the glioma immune landscape. Furthermore, PDCL3 interference also decreased the proliferation, invasion and migration of glioma cells. In conclusion, PDCL3 is a novel oncogene and can be adopted as a biomarker with value in assisting clinical diagnosis, predicting patient outcomes and assessing the immune landscape of the tumor microenvironment in glioma.

Keywords: PDCL3; glioma; immune landscape; prognostic biomarker; tumor microenvironment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers
  • Carrier Proteins
  • Glioma* / diagnosis
  • Glioma* / genetics
  • Humans
  • Multiomics*
  • Nerve Tissue Proteins
  • Prognosis
  • Tumor Microenvironment

Substances

  • phosducin
  • Biomarkers
  • PDCL3 protein, human
  • Carrier Proteins
  • Nerve Tissue Proteins

Grants and funding

This work was supported by The Health and Family Planning Commission of Wuhan Municipality (WX17Q42) and the National Natural Science Foundation of China (81903048).