Foci-forming regions of pyruvate kinase and enolase at the molecular surface incorporate proteins into yeast cytoplasmic metabolic enzymes transiently assembling (META) bodies

PLoS One. 2023 Apr 13;18(4):e0283002. doi: 10.1371/journal.pone.0283002. eCollection 2023.

Abstract

Spatial reorganization of metabolic enzymes to form the "metabolic enzymes transiently assembling (META) body" is increasingly recognized as a mechanism contributing to regulation of cellular metabolism in response to environmental changes. A number of META body-forming enzymes, including enolase (Eno2p) and phosphofructokinase, have been shown to contain condensate-forming regions. However, whether all META body-forming enzymes have condensate-forming regions or whether enzymes have multiple condensate-forming regions remains unknown. The condensate-forming regions of META body-forming enzymes have potential utility in the creation of artificial intracellular enzyme assemblies. In the present study, the whole sequence of yeast pyruvate kinase (Cdc19p) was searched for condensate-forming regions. Four peptide fragments comprising 27-42 amino acids were found to form condensates. Together with the fragment previously identified from Eno2p, these peptide regions were collectively termed "META body-forming sequences (METAfos)." METAfos-tagged yeast alcohol dehydrogenase (Adh1p) was found to co-localize with META bodies formed by endogenous Cdc19p under hypoxic conditions. The effect of Adh1p co-localization with META bodies on cell metabolism was further evaluated. Expression of Adh1p fused with a METAfos-tag increased production of ethanol compared to acetic acid, indicating that spatial reorganization of metabolic enzymes affects cell metabolism. These results contribute to understanding of the mechanisms and biological roles of META body formation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Phosphopyruvate Hydratase / genetics
  • Phosphopyruvate Hydratase / metabolism
  • Proteins / metabolism
  • Pyruvate Kinase* / genetics
  • Pyruvate Kinase* / metabolism
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Pyruvate Kinase
  • Phosphopyruvate Hydratase
  • Proteins

Grants and funding

This work was supported by Japan Science and Technology Agency (JST, https://www.jst.go.jp/), ACT-X Grant Number JPMJAX201G (NM), Novozymes Japan (https://www.novozymes.com/en/japan) Research Fund 2020 (NM), and Japan Society for the Promotion of Science (JSPS, https://www.jsps.go.jp/english/) KAKENHI Grant Number JP21H05228 (NM) and JP21H02121 (NM). This work was also partially supported by Ministry of Education, Culture, Sports, Science and Technology (MEXT, https://www.mext.go.jp/en/), Japan, Quantum Leap Flagship Program (MEXT Q-LEAP) Grant Number JPMXS0120330644 (NM). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.