Deciphering cell-cell interactions and communication in the tumor microenvironment and unraveling intratumoral genetic heterogeneity via single-cell genomic sequencing

Bioengineered. 2022 Jul-Dec;13(7-12):14974-14986. doi: 10.1080/21655979.2023.2185434.

Abstract

A tumor's heterogeneity has important implications in terms of its clonal origin, progression, stemness, and drug resistance. Therefore, because of its significance in treatment, it is important to understand the gene expression pattern of a single cell, track gene expression or mutation in heterogeneous cells, evaluate the clonal origin of cancer cells, and determine the selective evolution of different subpopulations of cancer cells. Researchers are able to trace a cell's mutation and identify different types of tumor cells by measuring the whole transcriptome with single-cell sequencing (scRNA-seq). This technology provides a better understanding of the molecular mechanisms driving tumor growth than that offered by traditional RNA sequencing methods. In addition, it has revealed changes in the mutations and functions of somatic cells as a tumor evolves; it has also clarified immune cell infiltration and activation. Research on scRNA-seq technology has recently advanced significantly, suggesting new strategies for the treatment of cancer. In short, cancer researchers have become increasingly dependent on scRNA-seq. This paper reviews the development, detection principles, and processes of scRNA-seq technology and their application in tumor research. It also considers potential clinical applications.

Keywords: ScRNA-seq; TME; cell-cell interactions; genome evolution; heterogeneity.

Plain language summary

Heterogeneity helps us determine the clonal origin, progression, and drug resistance of cancer cells.The gene expression pattern of a single cell has important biological significance.scRNA-seq enables a better understanding of cancer cells’ molecular mechanisms.scRNA-seq provides information about the entirety of a tumor from what we can learn about a single cell.

Publication types

  • Review

MeSH terms

  • Communication
  • Gene Expression Profiling / methods
  • Genetic Heterogeneity
  • Genomics
  • Humans
  • Neoplasms* / genetics
  • Sequence Analysis, RNA / methods
  • Single-Cell Analysis / methods
  • Tumor Microenvironment* / genetics

Grants and funding

The work was supported by the Natural Science Foundation of Hunan Province [2021JJ30060].