Targeting Transcriptional CDKs 7, 8, and 9 with Anilinopyrimidine Derivatives as Anticancer Agents: Design, Synthesis, Biological Evaluation and In Silico Studies

Molecules. 2023 May 23;28(11):4271. doi: 10.3390/molecules28114271.

Abstract

Cyclin-dependent kinases (CDKs) are promising targets in chemotherapy. In this study, we report a series of 2-anilinopyrimidine derivatives with CDK inhibitory activity. Twenty-one compounds were synthesized and their CDK inhibitory and cytotoxic activities were evaluated. The representative compounds demonstrate potent antiproliferative activities toward different solid cancer cell lines and provide a promising strategy for the treatment of malignant tumors. Compound 5f was the most potent CDK7 inhibitor (IC50 = 0.479 µM), compound 5d was the most potent CDK8 inhibitor (IC50 = 0.716 µM), and compound 5b was the most potent CDK9 inhibitor (IC50 = 0.059 µM). All the compounds satisfied the Lipinski's rule of five (molecular weight < 500 Da, number of hydrogen bond acceptors <10, and octanol-water partition coefficient and hydrogen bond donor values below 5). Compound 5j is a good candidate for lead optimization because it has a non-hydrogen atom (N) of 23, an acceptable ligand efficiency value of 0.38673, and an acceptable ligand lipophilic efficiency value of 5.5526. The synthesized anilinopyrimidine derivatives have potential as anticancer agents.

Keywords: 2-anilinopyrimidine; CDK; antiproliferative activity; molecular docking.

MeSH terms

  • Antineoplastic Agents* / chemistry
  • Cell Line, Tumor
  • Cell Proliferation
  • Cyclin-Dependent Kinases
  • Drug Design
  • Drug Screening Assays, Antitumor
  • Humans
  • Ligands
  • Molecular Docking Simulation
  • Molecular Structure
  • Neoplasms*
  • Structure-Activity Relationship

Substances

  • Ligands
  • Antineoplastic Agents
  • Cyclin-Dependent Kinases

Grants and funding

This research was funded by the Deputyship for Research and Innovation, Ministry of Education in Saudi Arabia through project no. (IFKSURC-1-0112).