A multi-class classification algorithm based on hematoxylin-eosin staining for neoadjuvant therapy in rectal cancer: a retrospective study

PeerJ. 2023 Jun 12:11:e15408. doi: 10.7717/peerj.15408. eCollection 2023.

Abstract

Neoadjuvant therapy (NAT) is a major treatment option for locally advanced rectal cancer. With recent advancement of machine/deep learning algorithms, predicting the treatment response of NAT has become possible using radiological and/or pathological images. However, programs reported thus far are limited to binary classifications, and they can only distinguish the pathological complete response (pCR). In the clinical setting, the pathological NAT responses are classified as four classes: (TRG0-3), with 0 as pCR, 1 as moderate response, 2 as minimal response and 3 as poor response. Therefore, the actual clinical need for risk stratification remains unmet. By using ResNet (Residual Neural Network), we developed a multi-class classifier based on Hematoxylin-Eosin (HE) images to divide the response to three groups (TRG0, TRG1/2, and TRG3). Overall, the model achieved the AUC 0.97 at 40× magnification and AUC 0.89 at 10× magnification. For TRG0, the model under 40× magnification achieved a precision of 0.67, a sensitivity of 0.67, and a specificity of 0.95. For TRG1/2, a precision of 0.92, a sensitivity of 0.86, and a specificity of 0.89 were achieved. For TRG3, the model obtained a precision of 0.71, a sensitivity of 0.83, and a specificity of 0.88. To find the relationship between the treatment response and pathological images, we constructed a visual heat map of tiles using Class Activation Mapping (CAM). Notably, we found that tumor nuclei and tumor-infiltrating lymphocytes appeared to be potential features of the algorithm. Taken together, this multi-class classifier represents the first of its kind to predict different NAT responses in rectal cancer.

Keywords: Deep learning; Multi-class classification algorithms; Neoadjuvant therapy; Pathology; Rectal cancer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Eosine Yellowish-(YS)
  • Hematoxylin
  • Humans
  • Neoadjuvant Therapy*
  • Rectal Neoplasms* / diagnostic imaging
  • Retrospective Studies
  • Staining and Labeling
  • Treatment Outcome

Substances

  • Hematoxylin
  • Eosine Yellowish-(YS)

Grants and funding

This work was supported by the National Natural Science Foundation of China [61906022], Chongqing Natural Science Foundation cstc2020jcyj-msxmX0482, Chongqing University Research Fund 2021CDJXKJC004, and Chongqing Medical Scientific Research project (Joint project of Chongqing Health Commission and Science and Technology Bureau) 2020MSXM088. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.