BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes

Thomas L Athey; Matthew A Wright; Marija Pavlovic; Vikram Chandrashekhar; Karl Deisseroth; Michael I Miller; Joshua T Vogelstein

doi:10.1007/s12021-023-09638-2

BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes

Neuroinformatics. 2023 Oct;21(4):637-639. doi: 10.1007/s12021-023-09638-2. Epub 2023 Jul 3.

Authors

Thomas L Athey^{1

2}, Matthew A Wright³, Marija Pavlovic⁴, Vikram Chandrashekhar⁵, Karl Deisseroth^{4

6

7

8}, Michael I Miller^{5

9

10

11}, Joshua T Vogelstein^{5

9

10

11}

Affiliations

¹ Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA. tathey1@jhu.edu.
² Institute of Computational Medicine, Johns Hopkins University, Baltimore, MD, USA. tathey1@jhu.edu.
³ Department of Psychiatry, Weill Cornell Medicine, New York, NY, USA.
⁴ Department of Bioengineering, Stanford University, Stanford, CA, USA.
⁵ Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
⁶ CNC Program, Stanford University, Stanford, CA, USA.
⁷ Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
⁸ Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.
⁹ Institute of Computational Medicine, Johns Hopkins University, Baltimore, MD, USA.
¹⁰ Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA.
¹¹ Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD, USA.

No abstract available

Publication types

Letter

MeSH terms

Brain* / diagnostic imaging
Fluorescence
Magnetic Resonance Imaging*

Publication types

MeSH terms

Grants and funding