Metabolomic rearrangement controls the intrinsic microbial response to temperature changes

bioRxiv [Preprint]. 2023 Aug 30:2023.07.22.550177. doi: 10.1101/2023.07.22.550177.

Abstract

Temperature is one of the key determinants of microbial behavior and survival, whose impact is typically studied under heat- or cold-shock conditions that elicit specific regulation to combat lethal stress. At intermediate temperatures, cellular growth rate varies according to the Arrhenius law of thermodynamics without stress responses, a behavior whose origins have not yet been elucidated. Using single-cell microscopy during temperature perturbations, we show that bacteria exhibit a highly conserved, gradual response to temperature upshifts with a time scale of ~1.5 doublings at the higher temperature, regardless of initial/final temperature or nutrient source. We find that this behavior is coupled to a temperature memory, which we rule out as being neither transcriptional, translational, nor membrane dependent. Instead, we demonstrate that an autocatalytic enzyme network incorporating temperature-sensitive Michaelis-Menten kinetics recapitulates all temperature-shift dynamics through metabolome rearrangement, which encodes a temperature memory and successfully predicts alterations in the upshift response observed under simple-sugar, low-nutrient conditions, and in fungi. This model also provides a mechanistic framework for both Arrhenius-dependent growth and the classical Monod Equation through temperature-dependent metabolite flux.

Keywords: Arrhenius; Bacillus subtilis; Escherichia coli; Michaelis-Menten kinetics; Schizosaccharomyces pombe; barcoded transposon mutant libraries; climate change; enthalpy; entropy; membrane fluidity; proteomics; temperature shift; thermodynamics.

Publication types

  • Preprint