Rare IFT140-Associated Phenotype of Cranioectodermal Dysplasia and Features of Diagnostic Journey in Patients with Suspected Ciliopathies

Genes (Basel). 2023 Jul 28;14(8):1553. doi: 10.3390/genes14081553.

Abstract

Here we present a patient with a cranioectodermal phenotype associated with pathogenic variants in the IFT140 gene. Most frequently, pathogenic variants in IFT140 correspond to the phenotype of Mainzer-Saldino syndrome. Only four patients have previously been described with this cranioectodermal phenotype and variants in IFT140. In comparison to other IFT140-cranioectodermal patients, our proband had similar skeletal features among with early onset end-stage renal failure that required kidney transplantation but did not have common ophthalmological features such as retinopathy, optic nerve atrophy, or nystagmus. Following exome sequencing, a splicing variant and exons 27-30 tandem duplication were suspected and further validated. The two other patients with Mainzer-Saldino syndrome that we described displayed a typical clinical picture but a special diagnostic journey. In both cases, at first only one pathogenic variant was detected following panel or exome NGS sequencing. Further WGS was performed for one of them where tandem duplication was found. Screening the third patient for the same tandem duplication was successful and revealed the presence of this duplication. Thus, we suggest that the description of the clinical feature polymorphism in a rare IFT140-cranioectodermal phenotype is extremely important for providing genetic counseling for families, as well as the formation of the correct diagnostic path for patients with a variant in IFT140.

Keywords: IFT140; ciliopathy; cranioectodermal dysplasia; thoracic dysplasia with short ribs.

Publication types

  • Case Reports

MeSH terms

  • Carrier Proteins
  • Ciliopathies* / diagnosis
  • Ciliopathies* / genetics
  • Craniosynostoses* / diagnosis
  • Craniosynostoses* / genetics
  • Humans
  • Phenotype

Substances

  • IFT140 protein, human
  • Carrier Proteins

Supplementary concepts

  • Cranioectodermal Dysplasia
  • Mainzer-Saldino Disease

Grants and funding

The research was carried out within the state assignment of the Ministry of Science and Higher Education of the Russian Federation for RCMG.